Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75280 272 / 2e-90 NmrA-like negative transcriptional regulator family protein (.1) AT4G39230 260 / 1e-85 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 257 / 2e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75300 244 / 2e-79 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 238 / 7e-77 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 227 / 1e-72 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 198 / 2e-61 ATPRR2 pinoresinol reductase 2 (.1) AT4G34540 192 / 2e-59 NmrA-like negative transcriptional regulator family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G103701 [exp] 641 / 0 AT1G75280 271 / 4e-90 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G123700 [exp] 428 / 7e-152 AT1G75280 284 / 4e-95 NmrA-like negative transcriptional regulator family protein (.1) Potri.019G078100 [exp] 349 / 5e-122 AT1G75280 169 / 9e-52 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118100 [exp] 271 / 3e-90 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 270 / 1e-89 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 270 / 2e-89 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 262 / 1e-86 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 255 / 2e-83 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.013G104000 [exp] 246 / 4e-83 AT4G39230 96 / 6e-25 NmrA-like negative transcriptional regulator family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026348 [exp] 269 / 2e-89 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 266 / 9e-88 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 264 / 3e-87 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 263 / 5e-87 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 262 / 2e-86 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 258 / 5e-83 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 221 / 4e-71 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10010403 [exp] 214 / 1e-67 AT1G32100 446 / 1e-158 pinoresinol reductase 1 (.1) Lus10012143 [exp] 214 / 1e-67 AT1G32100 447 / 1e-159 pinoresinol reductase 1 (.1) Lus10012145 [exp] 209 / 8e-66 AT1G32100 419 / 2e-148 pinoresinol reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01073 [poplar] [flax] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Potri.013G103850.1 pacid=42810901 polypeptide=Potri.013G103850.1.p locus=Potri.013G103850 ID=Potri.013G103850.1.v4.1 annot-version=v4.1 ATGGAGAATGAGATGAGCAAGATCCTCATATTTGGGGGAACTGGCTACATAGGCAAGTATATGGTGAAAGCAAGTGTTTCAATGGGTCACAAAACTTACG TATATGCTCGTTCCATCACCACGCAATCTTCTCCTGCTAAAATAGGCATCCACAAGGAATTCCAAGCCATGGGGGTCACCATTGTTCAAGGAGAATTCGA TGAGCAGGAGAAAATTGTATCGGTTCTTCGTCATGTGGATGTAGTAATCTCCACAGTAGCTTATCCTCAGGTTCTCGACCAGCTCAAAATCATAGAAGCC ATAAAAGTTGCTGGTAATATAAAGAGGTTCTTTCCGTCAGACTTTGGAGTTGAAGAGGACAGAGTGACTCCCTTGCCCCCATTTGAAGCTTTCCTTGAGA AGAAGAGGAAGATTAGAAGGGCCACAGAGGAAGCCGGAATCCCTTACACTTTTGTGTCAGCAAATTGCTTTGGTGCATATTTTGTCAATTACTTGCTCCG TCCACATGAGCAACCTCAAGATATCTCTGTCTATGGCTCTGGTGAAGCTAAGGCGGTGATAAACTATGAAGAAGATATAGCCATGTACACCATCAAAATA GCTGATGACCCCGAAACATGCAATCGAGTTGTAATCTATCGGCCGCAGAAGAACATTGTAACTCAGCTTGAACTTATTTCCCTTTGGGAGAAGAAGACTG GAAAGACATTTAATAGGATTTACGTCCCTGAGGATGAGATAGTGAAGCTCTCTGAGACCCTTCCACATCCACAAAATATTCCAGTTTCTATTCTTCACAG TTTGTTCGTGAAGGGTGACATGATGGGGTTTGAACTGGGAGAGGATGACTTGGAGGCTTCTGGGCTATATCCAGACCTGGAATTTAGAACAATCGATCAA CTTCTTGATATTTTTCTCACTAGCCCTCCAGATCCTGCAGCTGCTGCTTTTGAATGA
AA sequence Show only first row Show all	>Potri.013G103850.1 pacid=42810901 polypeptide=Potri.013G103850.1.p locus=Potri.013G103850 ID=Potri.013G103850.1.v4.1 annot-version=v4.1 MENEMSKILIFGGTGYIGKYMVKASVSMGHKTYVYARSITTQSSPAKIGIHKEFQAMGVTIVQGEFDEQEKIVSVLRHVDVVISTVAYPQVLDQLKIIEA IKVAGNIKRFFPSDFGVEEDRVTPLPPFEAFLEKKRKIRRATEEAGIPYTFVSANCFGAYFVNYLLRPHEQPQDISVYGSGEAKAVINYEEDIAMYTIKI ADDPETCNRVVIYRPQKNIVTQLELISLWEKKTGKTFNRIYVPEDEIVKLSETLPHPQNIPVSILHSLFVKGDMMGFELGEDDLEASGLYPDLEFRTIDQ LLDIFLTSPPDPAAAAFE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75280			NmrA-like negative transcripti...		Potri.013G103850 [exp]	0	1
AT1G75280			NmrA-like negative transcripti...		Potri.013G103701 [exp]	2.00	0.9929
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Potri.001G240300 [exp]	3.60	0.9876
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Potri.003G172400 [exp]	4.24	0.9913
AT3G05470			Actin-binding FH2 (formin homo...		Potri.005G026300 [exp]	6.24	0.9910
AT4G08910			unknown protein		Potri.002G231400 [exp]	8.00	0.9907
					Potri.006G028000 [exp]	8.94	0.9903
AT1G53160	SBP	SPL4	squamosa promoter binding prot...		Potri.001G398200 [exp]	9.27	0.9762
AT2G10940			Bifunctional inhibitor/lipid-t...		Potri.006G065500 [exp]	10.24	0.9902
AT1G12570			Glucose-methanol-choline (GMC)...		Potri.001G111500 [exp]	12.00	0.9899
AT1G55230			Family of unknown function (DU...		Potri.001G009000 [exp]	13.26	0.9858

Compare expression of checked genes

Potri.013G103850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.