Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 66 / 1e-11 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT1G12870 64 / 6e-11 F-box and associated interaction domains-containing protein (.1) AT5G10340 64 / 9e-11 F-box family protein (.1) AT3G62380 60 / 9e-10 unknown protein AT1G12855 61 / 1e-09 F-box family protein (.1) AT2G43260 60 / 1e-09 F-box and associated interaction domains-containing protein (.1) AT4G17780 59 / 3e-09 MYB MYB39, AtMYB39 F-box and associated interaction domains-containing protein (.1) AT3G06240 58 / 7e-09 F-box family protein (.1) AT2G02030 54 / 1e-07 F-box family protein (.1) AT1G13200 53 / 3e-07 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G037200 [exp] 73 / 6e-14 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.008G215901 [exp] 71 / 3e-13 AT3G07870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1) Potri.001G318300 [exp] 70 / 5e-13 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.011G037312 [exp] 70 / 7e-13 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.007G074084 [exp] 68 / 3e-12 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3) Potri.011G137200 [exp] 68 / 4e-12 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.012G014300 [exp] 67 / 5e-12 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.008G215800 [exp] 66 / 2e-11 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1) Potri.006G013000 [exp] 64 / 9e-11 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042738 [exp] 416 / 8e-144 AT1G12855 73 / 1e-13 F-box family protein (.1) Lus10029699 [exp] 408 / 1e-140 AT1G12855 71 / 5e-13 F-box family protein (.1) Lus10017086 [exp] 66 / 2e-11 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10037802 [exp] 58 / 5e-09 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10038603 [exp] 55 / 5e-08 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10036105 [exp] 54 / 1e-07 AT3G07870 206 / 1e-61 F-box and associated interaction domains-containing protein (.1) Lus10031020 [exp] 53 / 2e-07 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10018008 [exp] 52 / 5e-07 AT3G16210 82 / 6e-17 F-box family protein (.1) Lus10039024 [exp] 51 / 1e-06 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10008871 [exp] 50 / 3e-06 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.013G104100.6 pacid=42810878 polypeptide=Potri.013G104100.6.p locus=Potri.013G104100 ID=Potri.013G104100.6.v4.1 annot-version=v4.1 ATGGGCAAACCATTGGGGAACAGGAACATGGGGCTATCAAAATCTGTAGAAGAGAGAGCCTTGTCGAAGAAGATGGAGGATGATCAAAAGAAGCTGCCAG CTGGTCCAGCCCCTTATTTTCACAAGGATTGCATATCGAATATCCTTATTTGGCTGCCTCTTGAATCACTTCCAAGTTCAAGATTTGTGTGTAAGCCATG GTACAATATAATTAACAGCCGAACTTTCATCGATTCACATTTCCGTCGCTCTGAATCTGTTTTGATCTTTCTAAAATCAGTCTCAAGAGGAAGATCATAC CCTTATTCAAGACCAGACCCTTTTTCTATGACATCAATGCCAGAGGAACAAGGTAATACCTTTTCAGTTGAAGTAGCTTTGCTTCAATCGAACTTAAAAA CTGTCCCCATTTTTGGGCCCCATGTCACTGGCAGCTCATCAAAATTCTTTATCCAGTTCATGGAATTTAAAGAAGGAAAGATCAAGGTAGGGAAGTATAA TGTTAGCTGCCTGGGAAACATTAGAGCTACATGCAATGGCCTTATTTTGCTTGATAACCATGTGAAGAAAGGACTGATAGTCATGAATCCCGTGACACGG AAGCTCATTACACTTCCTCTTGGTACTTTGTGTAATTATCACAAGGAGTCCTATGGCTTTGCATTGAATCATGTCACCGGAGACTATAAGTTGGTGCACC TTTTTCGGGATGAGTTTGAGTATGTCACCTGTGAGACACTAGATCTTGCGACAAGATCATGGAGGGCAGTGAATGGACCTTCATTTGGCCTATTTAATTG GTTCGGGCATGCACCTGTTTCTGCAATTGGAGCTCTGCATTGGATTCCGCAGCTTGATAATAGTGATTTCATAGTGTCAATGGAAGTGGAGAACGAAAGA TTTCATTGCATACCGCTACCCCACCGTTGTACTACTCATGACAGGGTTATGGAGATGGGTGGTCTCTTATGTTTTGTCACACATGAAGACTTGAACATTG ATATTTGGAACTTGAAGAGTGTGCCTGAAGGCATTTGGACAAAGCAATATAGCATCACTAAAGGTAGCTTAATTGACATGGTTCCGCTTTTTAGTTTAAG AATCAGTGGAGATGTAATTTTCAGGAGGAAGGAAGATGGCTCATTCCATGCTTATGACTTTAAATCTGAAGTGATGAGAGAGTTTGAGATGGACAAAGAA CGCAACCTATCATCTGGCGCATACCTGCCTCATGTAAACAGCCTTCTCTCATGGACACCAAGTCATCATGTGTCTGATTGA
AA sequence Show only first row Show all	>Potri.013G104100.6 pacid=42810878 polypeptide=Potri.013G104100.6.p locus=Potri.013G104100 ID=Potri.013G104100.6.v4.1 annot-version=v4.1 MGKPLGNRNMGLSKSVEERALSKKMEDDQKKLPAGPAPYFHKDCISNILIWLPLESLPSSRFVCKPWYNIINSRTFIDSHFRRSESVLIFLKSVSRGRSY PYSRPDPFSMTSMPEEQGNTFSVEVALLQSNLKTVPIFGPHVTGSSSKFFIQFMEFKEGKIKVGKYNVSCLGNIRATCNGLILLDNHVKKGLIVMNPVTR KLITLPLGTLCNYHKESYGFALNHVTGDYKLVHLFRDEFEYVTCETLDLATRSWRAVNGPSFGLFNWFGHAPVSAIGALHWIPQLDNSDFIVSMEVENER FHCIPLPHRCTTHDRVMEMGGLLCFVTHEDLNIDIWNLKSVPEGIWTKQYSITKGSLIDMVPLFSLRISGDVIFRRKEDGSFHAYDFKSEVMREFEMDKE RNLSSGAYLPHVNSLLSWTPSHHVSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.013G104100 [exp]	0	1
AT2G31600			unknown protein		Potri.017G035200 [exp]	2.82	0.8893
AT2G32600			hydroxyproline-rich glycoprote...		Potri.016G097600 [exp]	3.16	0.8850
AT1G27050	HD	ATHB54	homeobox protein 54 (.1)		Potri.010G034500 [exp]	4.69	0.8721
					Potri.002G146750 [exp]	4.89	0.8795
					Potri.009G170400 [exp]	5.65	0.8768
AT2G45680	TCP	TCP9	TCP family transcription facto...		Potri.003G120201 [exp]	9.89	0.8782
AT3G62470			Pentatricopeptide repeat (PPR)...		Potri.014G121400 [exp]	10.95	0.8805
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Potri.004G094100 [exp]	12.24	0.8121
AT5G07900			Mitochondrial transcription te...		Potri.001G034500 [exp]	15.09	0.8684
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Potri.003G181900 [exp]	15.81	0.7976

Compare expression of checked genes

Potri.013G104100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.