Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72190 466 / 8e-165 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G17745 101 / 5e-23 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT4G34200 100 / 9e-23 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT2G45630 90 / 8e-20 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT3G19480 91 / 9e-20 D-3-phosphoglycerate dehydrogenase (.1) AT1G12550 87 / 5e-19 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT5G14780 78 / 1e-15 FDH formate dehydrogenase (.1) AT1G68010 71 / 2e-13 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT1G79870 69 / 1e-12 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G17744 43 / 8e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G300900 [exp] 100 / 5e-23 AT4G34200 885 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.014G022800 [exp] 100 / 8e-23 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1) Potri.002G151100 [exp] 97 / 3e-22 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G122700 [exp] 96 / 2e-21 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.009G096600 [exp] 96 / 2e-21 AT4G34200 888 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.010G249600 [exp] 96 / 3e-21 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.008G009500 [exp] 95 / 5e-21 AT1G17745 826 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.001G113250 [exp] 89 / 1e-19 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.002G151200 [exp] 89 / 1e-19 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009456 [exp] 463 / 3e-160 AT1G72190 456 / 2e-157 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10014096 [exp] 100 / 6e-23 AT4G34200 967 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10027868 [exp] 100 / 7e-23 AT4G34200 971 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10019818 [exp] 96 / 4e-21 AT4G34200 966 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10032150 [exp] 92 / 2e-20 AT5G14780 618 / 0.0 formate dehydrogenase (.1) Lus10025796 [exp] 89 / 2e-19 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 89 / 2e-19 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10041393 [exp] 88 / 4e-19 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 84 / 7e-18 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025795 [exp] 82 / 5e-17 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01262 [poplar] [flax] AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.013G104200.6 pacid=42811057 polypeptide=Potri.013G104200.6.p locus=Potri.013G104200 ID=Potri.013G104200.6.v4.1 annot-version=v4.1 ATGTTCTGCAACCGTCTTAATAAGACGACACTGATCAGTGCTGTGAAGAGAACTTGCGGCCTCCCCTGTGCTTTCACTCTCTCTAATCTCTCACCTCTCC ATTTCTCTACTGGTACATTGAGTGAGGTGGAGCAAATGGTTGGGAACAGTGACAAGCACATCACTCGTGTTCTCTTTTGTGGGCCATATTTCCCTGCTTC TCATCAGTACACTAAAGAATACTTGCAGAAGTACCCTTTCATCCAGGTTGATGATGTCCCACTTGCTGTCGTGCCTGATGTTATATCAAACTACAACATT TGCATAGTAAAAAACATGCGGCTAACTTCAAACATTATATCCCGTGCAACTCAGATGAAACTTATTATGCAGTTTGGTGTTGGCATTGAAGGAGTTGATA TTGATGCTGCTACAAAGTACGGAATTAAAGTCGCCAGAATTCCAGGTGATGCTACTGGAAATGCAGCATCATGTGCAGAGATGGCCATATATTTAATGTT GGGCCTTCTTCGGAAACAGAATGAGATGCAGATTTCCATAAAGCAGAAAAGGCTTGGAGAACCAGCTGGTGAGACACTATTTGGCAAGACAGTATTCATT ATGGGGTTTGGAAATATAGGGATTGATTTGGCAAAGCGCTTGCGACCATTCGGTGTCAAGATTATTGCCACAAAAAGGAGCTGGGCACTGCATTCTGAAG GTTCTCTTCAATCCAATGGTTTCCTAATTGAAAATGGTACCAATGATAATTTGGTTGACGAGAAGGGCAGTCATGAAGATATTTACAAGTTTGCTGGAGA GTCAGACATTGTTGTTTGTTGCTTGAGGATGAATAAAGAGACAGCTGGTATTGTGAACAAATCATTCATATCTTCAATGAAAAAGGGTTCCCTTTTGGTA AATATTGCTCGAGGAGGTCTCTTGGACTACAACGCTGTTGTGCATCATCTTGAGTCTGGACATTTAGGGGGCTTAGGAATTGATGTCGCTTGGACTGAGC CATTTGATCCTGATGATCCAATTCTCAAATTCAACAATGTTATAATCAGTCCTCATGTTGCAGGGGTTACAGAACACTCTTACAGATCCATGTCTAAGGT TGTTGGAGATGTTGCCCTTCAACTTCATTCAGGAAATCCTTTAACGGGCATAGAGATTGTGAACTGA
AA sequence Show only first row Show all	>Potri.013G104200.6 pacid=42811057 polypeptide=Potri.013G104200.6.p locus=Potri.013G104200 ID=Potri.013G104200.6.v4.1 annot-version=v4.1 MFCNRLNKTTLISAVKRTCGLPCAFTLSNLSPLHFSTGTLSEVEQMVGNSDKHITRVLFCGPYFPASHQYTKEYLQKYPFIQVDDVPLAVVPDVISNYNI CIVKNMRLTSNIISRATQMKLIMQFGVGIEGVDIDAATKYGIKVARIPGDATGNAASCAEMAIYLMLGLLRKQNEMQISIKQKRLGEPAGETLFGKTVFI MGFGNIGIDLAKRLRPFGVKIIATKRSWALHSEGSLQSNGFLIENGTNDNLVDEKGSHEDIYKFAGESDIVVCCLRMNKETAGIVNKSFISSMKKGSLLV NIARGGLLDYNAVVHHLESGHLGGLGIDVAWTEPFDPDDPILKFNNVIISPHVAGVTEHSYRSMSKVVGDVALQLHSGNPLTGIEIVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72190			D-isomer specific 2-hydroxyaci...		Potri.013G104200 [exp]	0	1
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Potri.005G006500 [exp]	2.82	0.8802
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.005G120500 [exp]	7.48	0.8878
AT3G20820			Leucine-rich repeat (LRR) fami...		Potri.003G207000 [exp]	10.67	0.8452	Pt-PGI.2
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Potri.010G190600 [exp]	11.66	0.8198
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Potri.008G120000 [exp]	17.74	0.8671	XYL1.2
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.004G131500 [exp]	28.98	0.8059	I.2
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Potri.013G083101 [exp]	32.61	0.8629
AT3G18050			unknown protein		Potri.015G040900 [exp]	34.91	0.8090
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.006G245600 [exp]	36.87	0.8608
AT3G62580			Late embryogenesis abundant pr...		Potri.002G197800 [exp]	43.54	0.7658

Compare expression of checked genes

Potri.013G104200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.