Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67480 474 / 7e-168 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G27420 268 / 2e-87 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 112 / 2e-27 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G60570 103 / 2e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G16250 96 / 7e-22 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G63220 94 / 4e-21 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G27150 92 / 4e-20 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G26930 91 / 6e-20 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G22040 87 / 2e-18 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74510 87 / 2e-18 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G059200 [exp] 600 / 0 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G176000 [exp] 599 / 0 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G004500 [exp] 115 / 9e-29 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 114 / 7e-28 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 111 / 6e-27 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G050600 [exp] 103 / 1e-24 AT3G63220 535 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G211700 [exp] 102 / 4e-24 AT3G63220 510 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.017G069500 [exp] 101 / 1e-23 AT3G27150 355 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G331500 [exp] 100 / 3e-23 AT3G27150 370 / 2e-125 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019425 [exp] 120 / 2e-30 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 119 / 1e-29 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10022061 [exp] 108 / 2e-26 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10030489 [exp] 107 / 2e-25 AT2G02870 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10012841 [exp] 105 / 1e-24 AT2G02870 568 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10002112 [exp] 103 / 2e-24 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013899 [exp] 102 / 2e-23 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10023608 [exp] 99 / 8e-23 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037413 [exp] 97 / 4e-22 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10041299 [exp] 95 / 2e-21 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.013G104300.2 pacid=42811294 polypeptide=Potri.013G104300.2.p locus=Potri.013G104300 ID=Potri.013G104300.2.v4.1 annot-version=v4.1 ATGCTTGGGATTGTGAGTGGAAAGAAGAGATTCACAGAAGCAAACATGACTTTTTCCACTTTGATCACACAAGATTTCAAGAGTAAACCTCGATTAGCTT CTCAGATCCCCAATGATATTGACAGCCCCATTCTACCCGGGCTGCCAGATGATGTGGCAAAGTATTGCCTTGCACTAGTTCCTCGCTCCCACTTCCCAAC CATGGGTTCTGTATGCAAGAAATGGAGGTCTTTTCTTAAAAGCAAAGAACTCATAACCATACGAAAATTAGCTGGTTTGCTAGAGGAATGGCTCTATGTC CTTACTATGGACTCTGAAGCAAAGGAAAGCCACTGGGAGGTTTTTGATTGTTTAGGACACAAACATCAACTTCTACCACCAATGCCTGGTCCAGTTAAGG CTGAGTTTGGGGTAGTGGTTCTAAATGGAAAGCTTCTTGTCATGGCTGGCTACTCAGTGATTGATGGTACTGGCTCTGCCTCTGCAGATGTTTATGAATA TGATTCTTGCCTCAACAGTTGGAGGAAATTGGCAAGCATGAATGTGGCTCGCTATGAGTTTGCTTGCGCAGAGGTTAATGGCAAAGTTTATGTCGTTGGA GGCAATGGGATGGATGGTGATAGTCTCTCTAGTGTTGAGATGTACAATCCTGACACTGACAAATGGACCTTGATAGAGAGTCTTCGCCGCCCTAGGCGGG GTTGCTTTGCTTGTAGCTTTGAGGGGAAACTTTATGTCATGGGAGGAAGGTCAAGCTTCACTATTGGCAATTCAAAATTTGTTGACGTGTACAATCCTGA AGGACACACTTGGTGTGAAATGAAGAATGGCCGTGTCATGGTTACTGCTCATGCTGTGCTGGGAAAGAAACTCTTCTGTATGGAGTGGAAGAACCAGAGG AAACTAGCTATATTCAGTCCAGAAGACAACTCATGGAAAATGGTACCAGTTCCTTTGACTGGGAGCTCAAGCATCGGGTTTCGGTTTGGGATACTTGATG GAAAACTTTTATTGTTCTCTCAAGAGATGGAGCCAGGTTACCGTACTCTATTGTATGATCCTGATGCATCCCCAGGCTCAGAGTGGCAGACTTCAGAGAT AAAGCCGTCTGGATGGTGTTTGTGCAGTGTGACCATCAAGGCATGA
AA sequence Show only first row Show all	>Potri.013G104300.2 pacid=42811294 polypeptide=Potri.013G104300.2.p locus=Potri.013G104300 ID=Potri.013G104300.2.v4.1 annot-version=v4.1 MLGIVSGKKRFTEANMTFSTLITQDFKSKPRLASQIPNDIDSPILPGLPDDVAKYCLALVPRSHFPTMGSVCKKWRSFLKSKELITIRKLAGLLEEWLYV LTMDSEAKESHWEVFDCLGHKHQLLPPMPGPVKAEFGVVVLNGKLLVMAGYSVIDGTGSASADVYEYDSCLNSWRKLASMNVARYEFACAEVNGKVYVVG GNGMDGDSLSSVEMYNPDTDKWTLIESLRRPRRGCFACSFEGKLYVMGGRSSFTIGNSKFVDVYNPEGHTWCEMKNGRVMVTAHAVLGKKLFCMEWKNQR KLAIFSPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSQEMEPGYRTLLYDPDASPGSEWQTSEIKPSGWCLCSVTIKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67480			Galactose oxidase/kelch repeat...		Potri.013G104300 [exp]	0	1
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Potri.008G177700 [exp]	3.46	0.6445
AT4G17260			Lactate/malate dehydrogenase f...		Potri.001G122400 [exp]	8.06	0.6244
AT4G37360		CYP81D2	"cytochrome P450, family 81, s...		Potri.014G021800 [exp]	10.58	0.6297
AT5G53750			CBS domain-containing protein ...		Potri.001G402900 [exp]	13.49	0.6030
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Potri.006G140300 [exp]	17.88	0.5874
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Potri.015G048000 [exp]	26.72	0.5604
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.014G021700 [exp]	31.65	0.6196
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.003G097100 [exp]	54.31	0.5820
AT5G07290		AML4	MEI2-like 4 (.1)		Potri.012G107100 [exp]	64.48	0.5522
AT1G80610			unknown protein		Potri.001G313900 [exp]	80.37	0.5379

Compare expression of checked genes

Potri.013G104300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.