Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33970 314 / 3e-106 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) AT1G33950 241 / 9e-78 Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2) AT1G33900 223 / 1e-70 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33960 219 / 1e-68 AIG1 AVRRPT2-INDUCED GENE 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33930 215 / 2e-67 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G09940 213 / 7e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G09950 205 / 1e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33890 200 / 9e-62 Avirulence induced gene (AIG1) family protein (.1) AT4G09930 191 / 3e-58 Avirulence induced gene (AIG1) family protein (.1) AT1G33910 189 / 8e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G077300 [exp] 512 / 0 AT1G33970 345 / 2e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005300 [exp] 350 / 3e-119 AT1G33970 321 / 7e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10005299 [exp] 322 / 2e-108 AT1G33970 339 / 5e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10003732 [exp] 183 / 5e-55 AT1G33970 210 / 1e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10028023 [exp] 174 / 1e-52 AT4G09940 181 / 2e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10026891 [exp] 151 / 3e-44 AT2G26820 156 / 2e-45 phloem protein 2-A3 (.1) Lus10009482 [exp] 148 / 9e-43 AT1G33970 148 / 9e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10009485 [exp] 134 / 1e-38 AT1G33970 142 / 2e-42 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10005301 [exp] 113 / 1e-30 AT1G33970 121 / 3e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10003507 [exp] 76 / 3e-17 AT1G33930 82 / 3e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009484 [exp] 80 / 2e-16 AT4G26220 255 / 1e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF04548 [poplar] [flax] AIG1 AIG1 family
Representative CDS sequence Show only first row Show all	>Potri.013G104800.5 pacid=42812357 polypeptide=Potri.013G104800.5.p locus=Potri.013G104800 ID=Potri.013G104800.5.v4.1 annot-version=v4.1 ATGATGGGTGGAAGTGCAATAGATGATGATTGGGAGCTTGCTTCACCATCCAATGGGGTTCGAACAGTTGTTTTAGTTGGACGCACAGGCAATGGAAAAA GTGCAACCGGTAACAGTATTCTTGGAAAAAAGGCCTTCAAGTCAAGAGCTAGCTCATCTGGTGTTACCAGTACTTGTGAATTGCAGAGTACTGTACTGGG AGATGGTCAAATTATCAATGTCATTGATACTCCTGGACTCTTTGATTTTTCTGCTGGATCTGAATTTGTTGGCAGAGAAATTGTCAAATGTATTAATATG GCAAAGGATGGGATCCACGCAGTCCTTGTAGTCTTCTCAGTTAGGACCCGCTTTTCACAGGAAGAAGAAGCAGCCCTTCGCAGCTTACAAACTTTGTTTG GAAGTAAGATACTTGACTACATGATTGTAGTCTTCACTGGGGGAGATGAGCTTGAAGATAATGATGAGACATTAGAAGATTATTTGGGCCGCGAGTGTCC ACAACCTTTAAAGGAAGTTCTCAAGTTGTGTGAGAATCGACGAGTTCTTTTCGATAACAAAACTAAAGATTTATTGAAGAGAGCTGAGCAGATGCAGGAG CTTCTCTCCCTTGTAAACAGGGTCATAGAACAGAATGCTGGGCAACCATACAGTGATGAATTATTTGCTGAAATACAGAAAGGGGAAATGAACTTCCGTG ATCAACAAGAAGAGGTTAATTCCTTGAAAGGGAACATTTCTATACGAGAAATATCAGAGTTGAAAGAGCAGATGCAAATACAATATGAAGAACAGCTGAA ACGAGTAACTGAGATGGTTGAGATGAAGCTTAAAGAGGCAACCGGTAATCTTGAGCGGCGGCTGGCAGAAGAGCATGCCGCTCGACTTCGCGCAGAAGAG AATGCACAATCAGAGCAAAGGAAATCAAACGAAGAAATTCGCATGCTAAGAGAGAGTCTAGAGAAGGCTCAGGAGGAGCTCCGTAAGAAGGGAGGCTGTG CCATTCTCTGA
AA sequence Show only first row Show all	>Potri.013G104800.5 pacid=42812357 polypeptide=Potri.013G104800.5.p locus=Potri.013G104800 ID=Potri.013G104800.5.v4.1 annot-version=v4.1 MMGGSAIDDDWELASPSNGVRTVVLVGRTGNGKSATGNSILGKKAFKSRASSSGVTSTCELQSTVLGDGQIINVIDTPGLFDFSAGSEFVGREIVKCINM AKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLKLCENRRVLFDNKTKDLLKRAEQMQE LLSLVNRVIEQNAGQPYSDELFAEIQKGEMNFRDQQEEVNSLKGNISIREISELKEQMQIQYEEQLKRVTEMVEMKLKEATGNLERRLAEEHAARLRAEE NAQSEQRKSNEEIRMLRESLEKAQEELRKKGGCAIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33970			P-loop containing nucleoside t...		Potri.013G104800 [exp]	0	1
AT1G11050			Protein kinase superfamily pro...		Potri.017G132250 [exp]	4.47	0.8155
AT3G57030			Calcium-dependent phosphotries...		Potri.016G037900 [exp]	5.09	0.7758
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.004G176950 [exp]	13.74	0.8188
AT3G04460		PEX12, ATPEX12,...	ABERRANT PEROXISOME MORPHOLOGY...		Potri.019G020000 [exp]	16.24	0.7720
AT1G09575			Protein of unknown function (D...		Potri.013G161300 [exp]	33.24	0.7549
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Potri.009G048000 [exp]	36.00	0.7635
AT4G16745			Exostosin family protein (.1.2...		Potri.003G079000 [exp]	48.78	0.7579
AT3G47570			Leucine-rich repeat protein ki...		Potri.005G037400 [exp]	51.16	0.7830
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Potri.006G041900 [exp]	52.91	0.7632
AT3G02750			Protein phosphatase 2C family ...		Potri.013G085500 [exp]	100.87	0.7258

Compare expression of checked genes

Potri.013G104800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.