Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AGL11.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09960 330 / 3e-116 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT4G18960 276 / 4e-94 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT2G42830 274 / 2e-93 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT3G58780 272 / 8e-93 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45660 169 / 1e-52 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT5G62165 162 / 4e-50 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT1G26310 161 / 3e-49 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT4G22950 160 / 3e-49 MADS AGL19 AGAMOUS-like 19 (.1) AT3G57230 160 / 9e-49 MADS AGL16 AGAMOUS-like 16 (.1.2) AT2G45650 160 / 1e-48 MADS AGL6 AGAMOUS-like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G077200 [exp] 305 / 4e-106 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.004G064300 [exp] 287 / 9e-99 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.011G075800 [exp] 278 / 3e-95 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.001G112400 [exp] 168 / 3e-52 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.002G151700 [exp] 164 / 7e-51 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.009G079000 [exp] 162 / 6e-50 AT4G37940 293 / 3e-101 AGAMOUS-like 21 (.1) Potri.003G119700 [exp] 162 / 8e-50 AT4G11880 226 / 4e-75 AGAMOUS-like 14 (.1) Potri.015G134800 [exp] 160 / 8e-49 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.014G074100 [exp] 158 / 3e-48 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005302 [exp] 357 / 4e-126 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10008264 [exp] 356 / 3e-125 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10009481 [exp] 295 / 3e-101 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10034663 [exp] 155 / 1e-46 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10006715 [exp] 154 / 2e-46 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10004638 [exp] 150 / 4e-45 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10026678 [exp] 150 / 4e-45 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10014143 [exp] 149 / 2e-44 AT4G22950 212 / 6e-69 AGAMOUS-like 19 (.1) Lus10031665 [exp] 146 / 2e-44 AT5G62165 179 / 8e-58 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Lus10005080 [exp] 149 / 3e-44 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.013G104900.2 pacid=42811403 polypeptide=Potri.013G104900.2.p locus=Potri.013G104900 ID=Potri.013G104900.2.v4.1 annot-version=v4.1 ATGGGAAGAGGAAAGATTGAGATCAAGAGGATCGAGAACACTACGAATCGTCAGGTTACTTTCTGCAAGAGAAGAAATGGGCTGTTGAAGAAAGCCTATG AATTATCTGTCCTTTGTGATGCTGAAGTTTCCCTCATCGTCTTCTCTAGCCGTGGCCGTCTCTATGAGTACGCCAACAACAATATAAGATCAACTATAGA TAGGTACAAGAAGGTCAGTTCAGATAGTTCAAATACTGCCTCTATCACAGAAATCAATGCCCAGTATTATCAACAAGAATCAGCAAAGATGCGTCAACAA ATTCAGTTGCTACAGAATTCTAACAGGCACTTAATGGGAGAAGCCGTGAGTAATCTGTCGGTGAAGGAGCTAAAGCAGCTGGAGAATAGGCTCGAAAGAG GCATGACTAGAATCAGGTCAAAGAAGCATGAATTGCTGCTAGCTGAAATTGAGTATATGCAGAAAAGGGAGATTGAGCTGGAAAATGAAAGTGCCTATCT TCGAACCAAGATAGCGGAAGTTGAGAGGCTTCAACAAGCCAACATGGTCACCGGAGAAGAGCTGAATGCAATCCAGGCATTAGCAGCCTCTCGCAATTTC TTTGCTCCTCATTTTCTTGAGGGTGGAACTGCATACCCGCACACTTATAACAAGAAGATTCTCCATCTTGGGTAA
AA sequence Show only first row Show all	>Potri.013G104900.2 pacid=42811403 polypeptide=Potri.013G104900.2.p locus=Potri.013G104900 ID=Potri.013G104900.2.v4.1 annot-version=v4.1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYANNNIRSTIDRYKKVSSDSSNTASITEINAQYYQQESAKMRQQ IQLLQNSNRHLMGEAVSNLSVKELKQLENRLERGMTRIRSKKHELLLAEIEYMQKREIELENESAYLRTKIAEVERLQQANMVTGEELNAIQALAASRNF FAPHFLEGGTAYPHTYNKKILHLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Potri.013G104900 [exp]	0	1	AGL11.2
AT5G28780			PIF1 helicase (.1)		Potri.003G004501 [exp]	2.44	0.9702
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.015G091600 [exp]	3.46	0.7835	PtrLHT1
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016118 [exp]	4.12	0.7289
					Potri.012G100750 [exp]	4.24	0.9702
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.012G114900 [exp]	6.48	0.9629
AT1G43760			DNAse I-like superfamily prote...		Potri.010G033133 [exp]	7.93	0.9014
AT1G43760			DNAse I-like superfamily prote...		Potri.003G047001 [exp]	8.36	0.8349
					Potri.007G065950 [exp]	8.48	0.8407
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Potri.002G092300 [exp]	13.22	0.6525
AT3G30180		CYP85A2, BR6OX2	brassinosteroid-6-oxidase 2 (....		Potri.010G156800 [exp]	13.41	0.7138

Compare expression of checked genes

Potri.013G104900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.