Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51965 856 / 0 ABO5 ABA Overly-Sensitive 5 (.1) AT3G06920 218 / 7e-61 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G31850 212 / 5e-58 PGR3 proton gradient regulation 3 (.1) AT5G39710 202 / 8e-56 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04760 199 / 1e-55 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62670 198 / 7e-55 RPF2 rna processing factor 2 (.1) AT1G63130 197 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 197 / 2e-54 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G12100 196 / 3e-53 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63080 192 / 9e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038300 [exp] 207 / 1e-58 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 206 / 8e-58 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G264800 [exp] 211 / 9e-58 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.019G019300 [exp] 202 / 8e-57 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G032600 [exp] 202 / 1e-56 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 203 / 2e-56 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 202 / 4e-56 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 201 / 4e-56 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G047000 [exp] 200 / 5e-56 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037592 [exp] 936 / 0 AT1G51965 792 / 0.0 ABA Overly-Sensitive 5 (.1) Lus10006850 [exp] 922 / 0 AT1G51965 782 / 0.0 ABA Overly-Sensitive 5 (.1) Lus10012068 [exp] 207 / 2e-56 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 203 / 6e-56 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 202 / 1e-55 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018567 [exp] 201 / 1e-55 AT1G03560 862 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10003424 [exp] 204 / 2e-55 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10043417 [exp] 201 / 1e-54 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006373 [exp] 194 / 1e-52 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000554 [exp] 190 / 2e-52 AT3G04760 535 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.013G105000.1 pacid=42811409 polypeptide=Potri.013G105000.1.p locus=Potri.013G105000 ID=Potri.013G105000.1.v4.1 annot-version=v4.1 ATGAGATTGAAAACCTACCGCGGCCAGATCCTCCTCCCTACAACAACCACCGCCATACTCATCCGCCGGTACGGAACAAAATATACAGCGAAAATAACCT CAACATCACCAACGGGAAGAACAGTCTCAGCCCAAGTAACCCCACCTCAACCTCTCCCCTCCGACTCCCGTGGCTACCCAATCCCCCGCCGTCAACTCAT CTGCGAAGCCACCCAAATTCTCCTCCAAACCCACCGATCTCCCCAAAAACTCCTTGACCCCACCGACCCTTTCCTTTGCCTCCAAAACTACCTCTCCGCC CTCTCCATTTCCCTCACTCCCAACGAAGCCTCCGAGATTCTAAAATCCCTGAACTCCCCGTCTCTCGCTCTCAGGTTCTTCCACTTTTGCCCATCCCTTT CCCCTAATTTCCACCACGACTGCTTCACCTACTCTCGCATCATCCTCATCCTCTCCAAATCCAACCTCCCCGATAGGTTCCACCTCGCCAGGTCCATCGT ATCTGAGATGGAGAGGAATGGGGTTCGTGGGTCAATCTCCACCGTTAATATATTGATTGGTTTTTATGAGAATAGTGAGGACCTGCAGAAGTGTATTGGG CTGATAAAGAAATGGGGATTGAGGATGACAGGATATACTTATAAGTGCTTGGTTCAAGCTTATTTGAGGTCACGCAATACTGAAAAGGGTTTTGCGGTTT ATTTGGAGATGAAGAAGAAAGGCCACATGCTTGATATTTTTGCTTTTAATATGCTCTTGGATGCCTTGGTCAAAGATAGCGAGGTTGACCATGCTTATAA GGTTTTTGAGGACATGAAAAGGAAGCATTGTGAGCCAGATGAATATACGTATACCATTATGATTAGAATGACTGGAAAGATTGGTAAACCTGATGAATCA TTGGAACTCTTTGAGGAAATGTTGAATAAGGGCTACTCTCCTAATGTAATTGCTTATAACACCATGATCCAGGCACTTGCTAATGCCCGGATGGTGGATA AGGCCATTCTTCTTTTCTTGAAGATGGTGGAGAAAGAGTGCCGGCCTAGTGAATTTACATATAGCGTCATCCTCCATCTTCTGGCTACAGAGAGGAAACT TCATAAGCTGGATGAGGTTGTGGAAGTGTCAAAGAAATATATGAGTAGGTCAATATATGCATATCTTGTAAGGACTCTGAAAAAATTGGGCCATGCAAGT GAAGCTCACAGGCTGTTTTGCAACATGTGGAACTGCCATGAAAGGGGGGATAGGGATGCATGTGTGTCCATGTTGGAGTGTTTATGCAGTGCTGGTAAAA CAACAGAGGCCATTGACCTGCTGGGTAAAATTCACGAGAAAGGAGTAAGTGTTGATACAGTCATGTATAATACAGTATTCAGTGCACTTGGCAAGTTAAA ACAAATATCTCCTCTTCATGATCTTTATGAAAAGATGAAGCAAGATGGTCCTTTGCCTGACACATTCACCTACAATATTCTGATCTCAAGCTTTGGTAGG GCAGGGAAAGTTGACGAGGCTATTAAAATATTTGAGGAACTTGAAGATAGTGATTATAAACCTGATACATGCTCGTATAATTCTTTGATAAATTGCCTTG GGAAGAATGGTCATCTTGATGAAGCTCACATGAAGTTTAAGGAAATGTGTGAAAAAGGATTGAATCCTGATGTTGTGACATACAGCACTCTCATAGAGTG CTTTGGAAAAACAGATAAAGTTGAAATGGCTTGCAGGTTATTCGATGAGATGCTTGCTGAAGGTTGCTATCCTAATATTGTAACTTACAACATCTTACTT GACTGTCTTGAGAGGAGTGGAAGGACTGCTGAAGCTGTTGATTTGTATGCAAAACTCAAACAGCAAGGTTTAATCCCTGATTCAATTACATATTCAGTGC TTGCACGATTGCAAAGTGGTTCACATAGAAAAGTTAGAGTTCGCAAGCAGAATCCTATTACAGGTTGGGTTGTTAGCCCGTTAAGGTGA
AA sequence Show only first row Show all	>Potri.013G105000.1 pacid=42811409 polypeptide=Potri.013G105000.1.p locus=Potri.013G105000 ID=Potri.013G105000.1.v4.1 annot-version=v4.1 MRLKTYRGQILLPTTTTAILIRRYGTKYTAKITSTSPTGRTVSAQVTPPQPLPSDSRGYPIPRRQLICEATQILLQTHRSPQKLLDPTDPFLCLQNYLSA LSISLTPNEASEILKSLNSPSLALRFFHFCPSLSPNFHHDCFTYSRIILILSKSNLPDRFHLARSIVSEMERNGVRGSISTVNILIGFYENSEDLQKCIG LIKKWGLRMTGYTYKCLVQAYLRSRNTEKGFAVYLEMKKKGHMLDIFAFNMLLDALVKDSEVDHAYKVFEDMKRKHCEPDEYTYTIMIRMTGKIGKPDES LELFEEMLNKGYSPNVIAYNTMIQALANARMVDKAILLFLKMVEKECRPSEFTYSVILHLLATERKLHKLDEVVEVSKKYMSRSIYAYLVRTLKKLGHAS EAHRLFCNMWNCHERGDRDACVSMLECLCSAGKTTEAIDLLGKIHEKGVSVDTVMYNTVFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILISSFGR AGKVDEAIKIFEELEDSDYKPDTCSYNSLINCLGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCYPNIVTYNILL DCLERSGRTAEAVDLYAKLKQQGLIPDSITYSVLARLQSGSHRKVRVRKQNPITGWVVSPLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51965		ABO5	ABA Overly-Sensitive 5 (.1)		Potri.013G105000 [exp]	0	1
AT5G14770			Tetratricopeptide repeat (TPR)...		Potri.019G043101 [exp]	3.16	0.8771
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Potri.004G134300 [exp]	7.48	0.8415
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.003G002950 [exp]	8.48	0.8346
AT5G51300			splicing factor-related (.1.2....		Potri.003G107200 [exp]	9.38	0.8290
AT2G43410		FPA	RNA binding (.1.2.3.4)		Potri.017G026600 [exp]	11.74	0.7751
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Potri.015G003000 [exp]	12.12	0.8388
AT5G66500			Tetratricopeptide repeat (TPR)...		Potri.007G022500 [exp]	13.41	0.8308
AT5G53770			Nucleotidyltransferase family ...		Potri.001G400800 [exp]	14.38	0.8265
AT3G16010			Pentatricopeptide repeat (PPR-...		Potri.001G180000 [exp]	14.49	0.8167
AT3G62310			RNA helicase family protein (....		Potri.002G192500 [exp]	20.44	0.7975

Compare expression of checked genes

Potri.013G105000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.