Plant FIBer expression Database

Potri.013G105200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G58140 680 / 0 phenylalanyl-tRNA synthetase class IIc family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018853
[exp]
692 / 0 AT3G58140 672 / 0.0 phenylalanyl-tRNA synthetase class IIc family protein (.1)
Lus10028547
[exp]
689 / 0 AT3G58140 665 / 0.0 phenylalanyl-tRNA synthetase class IIc family protein (.1)
Lus10018854
[exp]
72 / 3e-13 AT1G21660 402 / 5e-134 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0040 tRNA_synt_II PF01409 tRNA-synt_2d tRNA synthetases class II core domain (F)
CL0040 PF03147 FDX-ACB Ferredoxin-fold anticodon binding domain
Representative CDS sequence
>Potri.013G105200.2 pacid=42812191 polypeptide=Potri.013G105200.2.p locus=Potri.013G105200 ID=Potri.013G105200.2.v4.1 annot-version=v4.1
ATGGCTCTGTCTCTAGTCCACTCCACTCTCTTCTCCAAAACTTCCCAACTCTTTCTCCACACTAAAACTGGATTCTCTCACTTCTCTTCCTCTATCCCTT
TCTCCTCCTCTGCTCTCCCTTCAAACCCCAAAACTTGGAGACGACCTGTCATTTCTGTTCTTGAACTTGGTGGTGTCAAGATTGCCAGAGATGATGTGGT
GAGGGATGACCCTACAAATAATGTACCGGATACAATATTTTCTAAGCTTGGATTGCAACTTCATAGGAGGGATCAACATCCACTTGGAATTTTGAAGAAT
ACGATATATGACTATTTTGATACCAATTACTCAAATAAGTTCGACAAGTTTGACGAACTTTGCCCAATTGTTTCTGTTAAACAGAATTTTGATGATGTCT
TGGTTCCAGCTGATCATGTAAGCAGGAGCTATAATGACACATACTATGTTGACTCTCAAACTGTTTTAAGATGCCATACAAGTGCACATCAGGCAGAGCT
GTTGAGGAAGGGTCACACTCACTTTCTTGTAACTGGAGATGTCTATCGCAGAGATTCTATTGATTCAACTCACTACCCTGTTTTCCATCAGATGGAAGGG
TTTCGTGTTTTTTCTCCTGATGAATGGGAGGCATCTGGCGTGGATGGCACATCTTTTGCAGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCAACAC
ATTTATTTGGTGCTGTGGAGATGCGCTGGGTTGATACATATTTTCCTTTCACCAATCCATCGTTTGAACTTGAGATATATTTTCAGGAGAAGTGGCTGGA
AGTTTTAGGCTGTGGGGTGACAGAGCAAGAAATTTTAAAGAGGAATGGAAAACTTAATAATGTTGCTTGGGCTTTTGGACTTGGTTTGGAGCGACTTGCA
ATGGTTCTGTTTGATATCCCTGATATCCGGCTTTTCTGGTCAAATGATGAGCGATTTACTTCTCAGTTTTCTAAAGGTCAGCTAGGAATCAAATTCAAGC
CATTCTCAAAGTATCCTCCTTGTTACAAGGACATGAGTTTTTGGATCAATGAATCATTTACAGAAAACAATTTATGTGAAGTTGTCAGAGGAATTGCTGG
GGATCTTGTTGAGGAGGTGAGCTTGATAGACAATTTTTCAAACAAGAAAGGAATGACAAGTCACTGCTACAGGATTGCTTACCGATCCATGGAACGTTCA
CTTACTGATGAGGAGATCAATGATTTGCAGATGTCTGTGAGAGAACAGGTGCAAAGCAAGCTAAATGTCGTGCTAAGATGA
AA sequence
>Potri.013G105200.2 pacid=42812191 polypeptide=Potri.013G105200.2.p locus=Potri.013G105200 ID=Potri.013G105200.2.v4.1 annot-version=v4.1
MALSLVHSTLFSKTSQLFLHTKTGFSHFSSSIPFSSSALPSNPKTWRRPVISVLELGGVKIARDDVVRDDPTNNVPDTIFSKLGLQLHRRDQHPLGILKN
TIYDYFDTNYSNKFDKFDELCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLRKGHTHFLVTGDVYRRDSIDSTHYPVFHQMEG
FRVFSPDEWEASGVDGTSFAAEDLKKCLEGLATHLFGAVEMRWVDTYFPFTNPSFELEIYFQEKWLEVLGCGVTEQEILKRNGKLNNVAWAFGLGLERLA
MVLFDIPDIRLFWSNDERFTSQFSKGQLGIKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGIAGDLVEEVSLIDNFSNKKGMTSHCYRIAYRSMERS
LTDEEINDLQMSVREQVQSKLNVVLR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G58140 phenylalanyl-tRNA synthetase c... Potri.013G105200
[exp]
0 1
AT4G34730 ribosome-binding factor A fami... Potri.004G164200
[exp]
1.73 0.9783
AT1G11870 AtSRS, OVA7 ovule abortion 7, Seryl-tRNA s... Potri.002G100300
[exp]
2.00 0.9782
AT5G45170 Haloacid dehalogenase-like hyd... Potri.015G112500
[exp]
2.00 0.9795
AT3G26900 ATSKL1 Arabidopsis thaliana shikimate... Potri.017G062800
[exp]
2.44 0.9839 SK1
AT2G20920 Protein of unknown function (D... Potri.004G177300
[exp]
4.24 0.9728
AT1G09900 Pentatricopeptide repeat (PPR-... Potri.002G109500
[exp]
4.47 0.9760
AT5G53080 Tetratricopeptide repeat (TPR)... Potri.015G010800
[exp]
5.47 0.9724
AT4G35000 APX3 ascorbate peroxidase 3 (.1) Potri.004G174500
[exp]
6.48 0.9600
AT1G14270 CAAX amino terminal protease f... Potri.008G147600
[exp]
7.74 0.9710
AT2G01110 TATC, PGA2, APG... unfertilized embryo sac 3, TWI... Potri.010G117200
[exp]
8.00 0.9732 APG2.1

Potri.013G105200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.