Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22930 894 / 0 T-complex protein 11 (.1.2) AT4G09150 552 / 6e-178 T-complex protein 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G018500 [exp] 1081 / 0 AT1G22930 993 / 0.0 T-complex protein 11 (.1.2) Potri.004G217800 [exp] 1053 / 0 AT1G22930 1040 / 0.0 T-complex protein 11 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015468 [exp] 1030 / 0 AT1G22930 1083 / 0.0 T-complex protein 11 (.1.2) Lus10001363 [exp] 996 / 0 AT1G22930 1056 / 0.0 T-complex protein 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05794 [poplar] [flax] Tcp11 T-complex protein 11
Representative CDS sequence Show only first row Show all	>Potri.013G105300.1 pacid=42810739 polypeptide=Potri.013G105300.1.p locus=Potri.013G105300 ID=Potri.013G105300.1.v4.1 annot-version=v4.1 ATGGAGGAGATGACGGAACCGGAGAGGGTAGCAGGAGGAGGAGTGGCTTTGAGTTTCACGGTTAACGATGACAAAGCGATGTTAAATTCTCCAAAGGTTC TTCCTCCAAGATTAGGAAGACGTTTGCTTGGAGAGCCCAAAACACCACCCTCTGTCGAAGAAATCGAAGCTAAGCTCCGTGAAGCCAATCTCCGTCGCCA GCGATATCATCAATTGTTGTCGAGTAAAGCACGGTCGTCAACTTCAAAAAGCGGTTTAAGGGATTGTTTACAAGCAGAGGAGGATCTGGGGCAGAAAATT AAAGCAAGGCTCAATGCTGCTCAACAGAAAAGGCTAAGCATTCTTACTGAGGCTCAGATGCGCCTGGCAAGGTTAGATGAGCACCGGCAAGAAGCTAAAA GTGGACTAGAAATGCGTTTTGAGAAGGAGCGGGGTGAGCTTGGCATGAAGGTTGAGTCACGGGTTCAGCAAGCACAAGCAAACCGGATGCTTCTTCTTAA AGCTTATGGACAAAGGAGAGCAGCACGGAGAGAGCGAGCTGCTCAGTCATTGACGCAAAAAATGACCCAAGAGATCAAGTACAAAGAGAGTGTTCGTGCT GCAATTTACCAAAAACGTGCTGCTGCTGAGAGAAAACGGCTGGGATTGTTGGAAGCAGAAAGGACAAAGGCCCATTCAAGGATATTGCAAGTTCAGCGGG TAGCTACGTCCATTTATAGTCAACGGGAGATTGAGAGAAAACGGATAAAGGACCAGTTGGAATATAAGCTCCAGAAGGCTAAGAAGCAAAGGGCAGAACA TTTGAGGCAAAGAAGAAACCTGAATAGCCAAGCACATTTCAACTCAAAAACGATGCATGAGCAGGGGGAATATCTTTCAAGAAAGTTAACAAGGTGCTGG AGGCGGTTTGTAAAATTGAGGAAAACTACTCTCTCTTTGGCAAAAGCTTATATGTCGTTACAAATTAACCAAGAATCGGTTAAATCAATGCCATTTGTGC AGCTTGCTCTCTGTATTGAGTCAGCAACAACCATTCAAATTGTGAAAGCCTTTGTCGACCGGCTAGAGAGTCGCATCACACTCTCACAGGAAGTTACAGG TAACCTATCTAGTCTTTCCAAAATCGATCACCTTCTAAAGTACGCTGCTTTACCAAGTCGTAAGGGCCCTTCAAGCAATGCTACAAGAAGAGGAGCAAAA ATGATTAAGTCTAGTAAACTATCAAGGTACCCTGTCAGAGTTTTGCTCTGTGCTTACATGATAATGGGACACCCAGCTGAGGTTTTCAGTGGAGTGGGTG AGTGTGAGATTGTGCTGGCGGACTCTGCAGCCAACTTTATTCAAGAGTTTGAGTTGTTGGTCAAAATTATAATAGACGGCCCCATTAAAACGTCACAGGA AATAGCCTCTACAAATCCAAGTCAAAAGACTTTCAGATCTCAGCTGGAAGCCTTTGATAAAGCTTGGTGCATTTACCTGCATCGCTTTGTAGCATGGAAG TCTAAGGATGCGAAGTTGTTAGAGAAGGATTTAGTGAGAGCTGCTTGCCATCTTGAGCTCTCTCTGTTGCAAACCTGCAAGCTGACTTCCAGAAATACTC GTGATATGTATGGTATTAAAAAACAGGTTTTAGAAGAGCAGAAACTTCTCAGGGAAACCATACAGCATCTGAGTGGCAATGGTGGGCTGGAACATATGGA ACATGCTCTCTCTGATGTGCGGTCTAGATTTGTTGAAGCTGAGAAATCTGGGACTTCAATGGCATCTTTTACTTCAGATATTTTATCTTCCTTTTCACGC AATTCCCTTGAGGGCTCTTCAATTTCTGGCTTTGGTGAGAAGCGTGATCTGGCTGAATGTATTGGAAAGTCAAGCCACCAAATTCTCTCCTTATCTCAGG CAGATGATTCTTCCCCGGTCAAAGAACTTGATCCTTCACCTTCTAAAAGAACCATAAATAGCATTGTGCACTCTGACTCCATGTTGGCCAATGAGAATGA ATTACTAGTAAATGAAATTCTCCATGAACATCACCGTGGTTTTGATGATAGTCTTAATGTTACTGATGAAGATCAGAATAGCCTCAAGGCAAAAGTAAGA GAGACTATGGAAAAAGCTTTCTGGGATGGAATCACAGAATCCATGCAACAGGATGAACCTGATTTAAGTTGGGTTCTTAAACTCATGAAGGAAGTCAGGG ATGAGCTCTGTGAGATGTCTCCTCAGAGTTGGAGAGAGGAGATTGTTGAGACTATTGATGTTGATATTCTTTCCCAGGTGCTCAAATCAGGAACTTTAGA TATGGATTATCTTGGGAGGATTCTAGAGTTTGCACTAGTCACGTTGCAGAAACTTTCTGCTCCTGCAAATGATGAGGAGATCAAGACCTCTCACGATAAT TTACTGAAAGAACTAAGAGAGATATCTCAAGCTGTGGATATATCAAATGCTTCATTTTCCCTCTTAATGATTAAAGGTCTGCGCTTTATCCTGAAGGAGA TTCAGATTCTGAAGACTGAGATTAGTAGAGCACGCATTAGACTTGTGGAACCACTCATCAAAGGACCTGCTGGTTTGGAATATCTGAAAAAAGCTTTCGC TGACCGATATGGTTCTCCCACTGATGCTACATCCTTGCTACCCCTGACGAGGAAATGGATGGCATCTGTGCATGCAGGTGCTGAACAGGAGTGGGAAGAG TACGTAGATTCTGTATCTGCTACAACAAGTGATACCCAAGTGTCTATTCCAACAGCACTTAGGACTGGAGGCAGTGTTTTAACAACATCAAAAATTGGAC CTCCAACTTCCACAACAGGTCTTGAACAGCCAGGATGCACGGGAGAAAAGGCTGACTTGTTGATTAGGCTTGGCTTGATGAAGCTTGTGATCGGAGTAGG AGGGCTGACTCTTGAAGCTCTGCCCGAAACTCTCAAACTTAATCTATCCAGGCTAAGACGTGTCCAATCACAACTTCAGAAAATCATTACCATCTCTACA AGTGCATTGGTCCTTAGGCAAACCCTTCTGACAGAGAACTTGGTAACTAGTTCTGTGGACATGGAGAATGTAGTATCTGAGTGTGCGATGAAGCTTTCTG AGCTATTAGACAGCGTGGAAGATGTGGGTATTTTGGAAATTGTTGATACAATTAGTGCGGTATCAAAAAGCAGTGGCCATGATTCAAATGATGAAAAGCT CCGAGCAAGGAAGGAGGTTATGTCAAGCATGTTGGTGAAAAGCTTGCAAGCCGGGGATGCTATATTTGAGCTTGTGTCTCGCACTATTTATCTGGCTATG AAGGGGGCTGTGTTGGGAGGAAGTGGATCTAAAGGAAGGGAATTGGTGGAGACAACTCTTCGGCGAGTGGGAGCAACTCTTCTTTCAAATAGGGTAATGG AGGCTGCTGAAGTTCTTGTTGTGGTGGCAATGGTTTCATTGAGTGTTCATGGCGAATGGTATGAAGAATTGATCAAGAATCTGTAA
AA sequence Show only first row Show all	>Potri.013G105300.1 pacid=42810739 polypeptide=Potri.013G105300.1.p locus=Potri.013G105300 ID=Potri.013G105300.1.v4.1 annot-version=v4.1 MEEMTEPERVAGGGVALSFTVNDDKAMLNSPKVLPPRLGRRLLGEPKTPPSVEEIEAKLREANLRRQRYHQLLSSKARSSTSKSGLRDCLQAEEDLGQKI KARLNAAQQKRLSILTEAQMRLARLDEHRQEAKSGLEMRFEKERGELGMKVESRVQQAQANRMLLLKAYGQRRAARRERAAQSLTQKMTQEIKYKESVRA AIYQKRAAAERKRLGLLEAERTKAHSRILQVQRVATSIYSQREIERKRIKDQLEYKLQKAKKQRAEHLRQRRNLNSQAHFNSKTMHEQGEYLSRKLTRCW RRFVKLRKTTLSLAKAYMSLQINQESVKSMPFVQLALCIESATTIQIVKAFVDRLESRITLSQEVTGNLSSLSKIDHLLKYAALPSRKGPSSNATRRGAK MIKSSKLSRYPVRVLLCAYMIMGHPAEVFSGVGECEIVLADSAANFIQEFELLVKIIIDGPIKTSQEIASTNPSQKTFRSQLEAFDKAWCIYLHRFVAWK SKDAKLLEKDLVRAACHLELSLLQTCKLTSRNTRDMYGIKKQVLEEQKLLRETIQHLSGNGGLEHMEHALSDVRSRFVEAEKSGTSMASFTSDILSSFSR NSLEGSSISGFGEKRDLAECIGKSSHQILSLSQADDSSPVKELDPSPSKRTINSIVHSDSMLANENELLVNEILHEHHRGFDDSLNVTDEDQNSLKAKVR ETMEKAFWDGITESMQQDEPDLSWVLKLMKEVRDELCEMSPQSWREEIVETIDVDILSQVLKSGTLDMDYLGRILEFALVTLQKLSAPANDEEIKTSHDN LLKELREISQAVDISNASFSLLMIKGLRFILKEIQILKTEISRARIRLVEPLIKGPAGLEYLKKAFADRYGSPTDATSLLPLTRKWMASVHAGAEQEWEE YVDSVSATTSDTQVSIPTALRTGGSVLTTSKIGPPTSTTGLEQPGCTGEKADLLIRLGLMKLVIGVGGLTLEALPETLKLNLSRLRRVQSQLQKIITIST SALVLRQTLLTENLVTSSVDMENVVSECAMKLSELLDSVEDVGILEIVDTISAVSKSSGHDSNDEKLRARKEVMSSMLVKSLQAGDAIFELVSRTIYLAM KGAVLGGSGSKGRELVETTLRRVGATLLSNRVMEAAEVLVVVAMVSLSVHGEWYEELIKNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22930			T-complex protein 11 (.1.2)		Potri.013G105300 [exp]	0	1
AT2G25760			Protein kinase family protein ...		Potri.018G046400 [exp]	5.47	0.8907
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Potri.017G146600 [exp]	7.34	0.9124
AT2G25140		HSP98.7, CLPB-M...	HEAT SHOCK PROTEIN 98.7, CASEI...		Potri.006G262700 [exp]	9.59	0.8914
AT1G04560			AWPM-19-like family protein (....		Potri.017G113000 [exp]	12.96	0.8904
AT5G48570		ROF2, ATFKBP65	FKBP-type peptidyl-prolyl cis-...		Potri.014G149400 [exp]	13.19	0.9020
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Potri.008G062350 [exp]	15.19	0.8939
AT5G01110			Tetratricopeptide repeat (TPR)...		Potri.001G139300 [exp]	17.74	0.8568
AT1G66510			AAR2 protein family (.1.2.3)		Potri.017G123900 [exp]	17.74	0.8848
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Potri.011G107600 [exp]	19.69	0.7523
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.003G109200 [exp]	20.61	0.8910	HSP23.1

Compare expression of checked genes

Potri.013G105300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.