Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72175 264 / 4e-91 RING/U-box protein with domain of unknown function (DUF 1232) (.1) AT1G22510 234 / 2e-79 RING/U-box protein with domain of unknown function (DUF 1232) (.1), RING/U-box protein with domain of unknown function (DUF 1232) (.2) AT4G33940 140 / 2e-41 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G078800 [exp] 302 / 2e-106 AT1G72175 259 / 3e-89 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Potri.004G143900 [exp] 134 / 4e-39 AT4G33940 221 / 2e-72 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009529 [exp] 277 / 2e-96 AT1G72175 261 / 5e-90 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Lus10020349 [exp] 277 / 4e-96 AT1G72175 261 / 8e-90 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Lus10027921 [exp] 152 / 2e-46 AT4G33940 251 / 3e-84 RING/U-box superfamily protein (.1) Lus10012062 [exp] 149 / 3e-45 AT4G33940 252 / 2e-84 RING/U-box superfamily protein (.1) Lus10014366 [exp] 137 / 1e-38 AT4G33940 189 / 2e-57 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G105400.1 pacid=42810892 polypeptide=Potri.013G105400.1.p locus=Potri.013G105400 ID=Potri.013G105400.1.v4.1 annot-version=v4.1 ATGGATGGACCTCCAGGGAACGATTGTTGCGCCATATGCCATGGACACTTCAACATTGCTTGTCAGGCCAATTGCTCTCATTGGTTTTGCGGTGATTGTA TTATGCTTGTTTGGCATCATGGATCTGTACTCCAGCCATGTAAATGTCCGCTGTGTCGTCGACAGATTACATTGTTGGTTCCTGGTGAAGCTTCATTAAG GGAGCGCAATGATCCTCATGTTGCTGAGGTTCTTGGAAAAATTGAAAGATACAATCATCTTTTTGGTGGAAATACCAGTAGTCTTGTTCAGAGAATGCAA GACCTTCCATTTCTTCTCCGGAGGTTGTTGCGAGAAATAATGGATCCCCAAAGATCTCTTCCTGTGGTCATCAAGGCACGTGTCTACATTGCAATGGTAT TAAGTGCTGTCTACATCATCAGCCCTGTAGACATTATTCCAGAAGGAATTTTGGGAATAGTTGGTCTCTTGGATGATCTCCTCATAGTGCTCATCTGCTT TCTTCATGTTGCTGCCATCTACCGGTCAGTGCTCTATTATCGTCATGGAGGTTCTTGA
AA sequence Show only first row Show all	>Potri.013G105400.1 pacid=42810892 polypeptide=Potri.013G105400.1.p locus=Potri.013G105400 ID=Potri.013G105400.1.v4.1 annot-version=v4.1 MDGPPGNDCCAICHGHFNIACQANCSHWFCGDCIMLVWHHGSVLQPCKCPLCRRQITLLVPGEASLRERNDPHVAEVLGKIERYNHLFGGNTSSLVQRMQ DLPFLLRRLLREIMDPQRSLPVVIKARVYIAMVLSAVYIISPVDIIPEGILGIVGLLDDLLIVLICFLHVAAIYRSVLYYRHGGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72175			RING/U-box protein with domain...		Potri.013G105400 [exp]	0	1
					Potri.001G129500 [exp]	3.46	0.7952
AT1G80500			SNARE-like superfamily protein...		Potri.001G043400 [exp]	5.47	0.8007
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.001G236700 [exp]	6.78	0.8293	ADF1,Pt-ADF.5
AT3G53000		ATPP2-A15	phloem protein 2-A15 (.1)		Potri.006G117600 [exp]	8.83	0.7640
AT1G49245			Prefoldin chaperone subunit fa...		Potri.013G072700 [exp]	11.22	0.7435
AT1G79440		ENF1, SSADH1, A...	SUCCINIC SEMIALDEHYDE DEHYDROG...		Potri.010G174000 [exp]	12.88	0.6891	Pt-ALDH5.2
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Potri.008G115300 [exp]	18.89	0.7539
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.015G062800 [exp]	18.97	0.8015
AT4G00752			UBX domain-containing protein ...		Potri.014G075600 [exp]	20.49	0.7911
AT5G20165			unknown protein		Potri.010G058300 [exp]	20.78	0.8016

Compare expression of checked genes

Potri.013G105400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.