Plant FIBer expression Database

Potri.013G105500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G35340 285 / 1e-94 ATP-dependent protease La (LON) domain protein (.1), ATP-dependent protease La (LON) domain protein (.2), ATP-dependent protease La (LON) domain protein (.3), ATP-dependent protease La (LON) domain protein (.4)
AT1G75460 44 / 7e-05 ATP-dependent protease La (LON) domain protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G029900
[exp]
43 / 0.0002 AT1G75460 373 / 3e-131 ATP-dependent protease La (LON) domain protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008251
[exp]
212 / 1e-66 AT1G35340 223 / 3e-71 ATP-dependent protease La (LON) domain protein (.1), ATP-dependent protease La (LON) domain protein (.2), ATP-dependent protease La (LON) domain protein (.3), ATP-dependent protease La (LON) domain protein (.4)
Lus10016932
[exp]
222 / 6e-66 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0178 PUA PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain
Representative CDS sequence
>Potri.013G105500.1 pacid=42811611 polypeptide=Potri.013G105500.1.p locus=Potri.013G105500 ID=Potri.013G105500.1.v4.1 annot-version=v4.1
ATGCTAGCCACAATTTTAACTGCTCTTTTCTCCTCCTCCTCCTTCCACTATCATTCGGCACCAAACAAACCAAACCACAAAAGAAGTAAACGAAATCAAG
TCAGGTTATCTTTTTCCATGATTTGTTGCAGCAGCAGCAGCAGCAGTATAGCAATCCTCAGTACTGCTTCAAGAATTGATGGTACTGTTTCAAGAACCCG
AACTCGTAACTCATTATCACTATTATCCCATTCTTTCCATCTCCAAGTGAATGTAAATGGGAATCATCAGCTATTTATAAGGAGGAGAATAAGCAGATGG
TGCCGTGTGTCTCCAAATGCCTCCTCCTCTCTTGAGCTCCCTCTTCTTCCTTTTAACACGAACGAGGTTCTAGTTCCATCTGAGAGTAAAACACTCCATC
TATATGAAGCCAGATATCTAGCTCTGCTCGAGGAGTCTTTATTAAGAAAGAAGCTGTTTGTGCATTTTGTATTGGATCCTATTCTCATTAGCAACTCAGG
AACTGAAGCATCCTTTGCTGCTAGATATGGCTGTTTAGTCAATATAGAAAATATCGAACGCTTAGATGTTGGAGCATTAGTCTCCATACGGGGAATTGGC
CGTGTCAAGCTTTTGAATTTTGTACAGTCGGAGCCTTACCTGAAAGGTGAAGTCATACCATTACAGGATAGGTTTATTGGTGCAAATGAAATCAGCTCTA
AAGTTATAGCAGTGAAGGACGCTCTTCGCAGTTTGAATAGCTTGGAAATCAAACTAAAGGCTCCCAAAGAGGAATTGTTGCAAACCTGTACTGCAAACTC
TCTAACATGGGCAGAGAAGGAACCGTCCCTGGAATGTGATCAATCTTTCATCCCATCTCCTGCTGAGCGAATATCATTTGCAGCATTCCAACCTATTACA
AGATCTACACAATCAGAAACACTCAAGTTGCAGCAACAGAAGTTAAGAGCAATGGATCTGAAAGACACGCTACAAAGGCTGGACAATTCACTAGATTTAG
TGAATGAGAATATATCCATGGTAGCAGCCAAGCTTGCTATTCAATCATTAGAGATGCAGTAA
AA sequence
>Potri.013G105500.1 pacid=42811611 polypeptide=Potri.013G105500.1.p locus=Potri.013G105500 ID=Potri.013G105500.1.v4.1 annot-version=v4.1
MLATILTALFSSSSFHYHSAPNKPNHKRSKRNQVRLSFSMICCSSSSSSIAILSTASRIDGTVSRTRTRNSLSLLSHSFHLQVNVNGNHQLFIRRRISRW
CRVSPNASSSLELPLLPFNTNEVLVPSESKTLHLYEARYLALLEESLLRKKLFVHFVLDPILISNSGTEASFAARYGCLVNIENIERLDVGALVSIRGIG
RVKLLNFVQSEPYLKGEVIPLQDRFIGANEISSKVIAVKDALRSLNSLEIKLKAPKEELLQTCTANSLTWAEKEPSLECDQSFIPSPAERISFAAFQPIT
RSTQSETLKLQQQKLRAMDLKDTLQRLDNSLDLVNENISMVAAKLAIQSLEMQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G35340 ATP-dependent protease La (LON... Potri.013G105500
[exp]
0 1
AT4G21445 unknown protein Potri.004G033400
[exp]
1.00 0.9846
AT5G01920 STN8 State transition 8, Protein ki... Potri.016G138500
[exp]
1.73 0.9794
AT5G19940 Plastid-lipid associated prote... Potri.006G276400
[exp]
2.44 0.9811
AT5G01920 STN8 State transition 8, Protein ki... Potri.006G109700
[exp]
4.47 0.9794
AT5G57040 Lactoylglutathione lyase / gly... Potri.018G056200
[exp]
5.00 0.9786
AT1G67280 Glyoxalase/Bleomycin resistanc... Potri.006G160600
[exp]
8.94 0.9697
AT1G52220 unknown protein Potri.001G184700
[exp]
9.16 0.9689
AT2G32500 Stress responsive alpha-beta b... Potri.014G154900
[exp]
9.48 0.9675
AT1G50450 Saccharopine dehydrogenase (.... Potri.009G050100
[exp]
9.59 0.9630
AT3G01440 PnsL3, PQL2, PQ... PsbQ-like 2, Photosynthetic ND... Potri.001G416400
[exp]
10.00 0.9734

Potri.013G105500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.