Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22520 106 / 2e-31 Domain of unknown function (DUF543) (.1), Domain of unknown function (DUF543) (.2) AT1G72170 100 / 6e-29 Domain of unknown function (DUF543) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G079101 [exp] 148 / 5e-48 AT1G22520 101 / 2e-29 Domain of unknown function (DUF543) (.1), Domain of unknown function (DUF543) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009454 [exp] 102 / 1e-28 AT1G22520 120 / 1e-35 Domain of unknown function (DUF543) (.1), Domain of unknown function (DUF543) (.2) Lus10001541 [exp] 72 / 8e-18 AT1G22520 114 / 2e-34 Domain of unknown function (DUF543) (.1), Domain of unknown function (DUF543) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04418 [poplar] [flax] DUF543 Domain of unknown function (DUF543)
Representative CDS sequence Show only first row Show all	>Potri.013G105766.1 pacid=42812657 polypeptide=Potri.013G105766.1.p locus=Potri.013G105766 ID=Potri.013G105766.1.v4.1 annot-version=v4.1 ATGGCAGAGAAAACCGACGTGAATGCAAAATGGGACGCGTGTCTAGATCTGTCGGTCCGTCGTTTTGTTTACTCTTCATTGGCCGGTGCTTTTGGCGGTC TTCTTCTCTTCAGGACCCCAGTGACTCGCTGGGCATCTATAGCTTTCGGTGCTGGAGTAGGCATTGGATCTGCATATACTGACTGTTCTCAAATTTTTGA TGGGTCAACTGCAAAGTTGGTACCACCTAAGACTACATCAAGTGCTCCTGAAGAGTTACAACCTCCTAATACTATGAGTACTCCCGCTTCGCAGGATGGC CAGGACTGA
AA sequence Show only first row Show all	>Potri.013G105766.1 pacid=42812657 polypeptide=Potri.013G105766.1.p locus=Potri.013G105766 ID=Potri.013G105766.1.v4.1 annot-version=v4.1 MAEKTDVNAKWDACLDLSVRRFVYSSLAGAFGGLLLFRTPVTRWASIAFGAGVGIGSAYTDCSQIFDGSTAKLVPPKTTSSAPEELQPPNTMSTPASQDG QD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22520			Domain of unknown function (DU...		Potri.013G105766 [exp]	0	1
AT1G04630		MEE4	maternal effect embryo arrest ...		Potri.001G054500 [exp]	1.00	0.8463
AT3G10860			Cytochrome b-c1 complex, subun...		Potri.013G159700 [exp]	2.64	0.7988
AT5G10160			Thioesterase superfamily prote...		Potri.003G020300 [exp]	2.82	0.8394
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.004G131500 [exp]	4.89	0.8325	I.2
AT3G01130			unknown protein		Potri.004G164066 [exp]	8.00	0.7544
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Potri.009G133000 [exp]	9.16	0.7866
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Potri.003G048700 [exp]	12.32	0.7637
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Potri.016G091200 [exp]	12.60	0.7354
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Potri.009G039600 [exp]	13.74	0.7618	TIM10.1
AT3G22110		PAC1	20S proteasome alpha subunit C...		Potri.006G008800 [exp]	15.96	0.8018	Pt-PAC1.1

Compare expression of checked genes

Potri.013G105766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.