Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72160 573 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G09160 550 / 0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G22530 379 / 2e-123 PATL2 PATELLIN 2 (.1) AT1G72150 373 / 1e-122 PATL1 PATELLIN 1 (.1) AT1G30690 347 / 5e-113 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT3G51670 342 / 1e-112 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G01630 77 / 1e-15 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G19650 71 / 2e-12 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G34580 69 / 6e-12 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21520 67 / 2e-11 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G079300 [exp] 851 / 0 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011100 [exp] 527 / 0 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011101 [exp] 526 / 0 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G138200 [exp] 521 / 6e-180 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G106000 [exp] 516 / 1e-177 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079500 [exp] 498 / 8e-171 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G461400 [exp] 390 / 6e-130 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.016G127700 [exp] 343 / 3e-113 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G224800 [exp] 278 / 2e-87 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001539 [exp] 488 / 2e-171 AT1G72160 490 / 1e-173 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10001542 [exp] 457 / 3e-156 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10009453 [exp] 383 / 4e-130 AT1G72160 389 / 9e-134 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10038435 [exp] 359 / 6e-118 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10031752 [exp] 353 / 7e-114 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10001269 [exp] 317 / 9e-103 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10012219 [exp] 313 / 2e-102 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10009458 [exp] 295 / 2e-94 AT4G09160 275 / 2e-87 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10003552 [exp] 240 / 2e-72 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10031175 [exp] 221 / 2e-68 AT1G30690 273 / 2e-89 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.013G105900.1 pacid=42812699 polypeptide=Potri.013G105900.1.p locus=Potri.013G105900 ID=Potri.013G105900.1.v4.1 annot-version=v4.1 ATGGCCGAAGAATCCTCTCCACCACCACCAGTACTTGAGCAAGCTCCACCTTCTCCAGCCATAGAGAAAGATAAAGAAGACTTGCCACCCCCAGCACCAG TTGAGGAAGCTGAATCACAAGCTGTACAGGAGAAGGAAGAGGTGCCACCACAACCAGCTGCAGCAGAACAAAAGGAGTCTAGATCATCATCCTTGGCGGC GATGATTGAGAAAGAAGAGTCATTTTCACCACCACCACAACCACTTTTTTCTCCTGAGGAGAAAACCGAGGTAACTGAAAAATCAGTAGCTACTAAAGAA GAGGTTGCTGTTGTTCCTGACACTGGGAAAGAGAAAAAAGTTCCTCTAACTTTGGTTTCTTTCAAGGAAGAGAGTAACGCACTGGCTGATCTCTCTCATA TTGAGAGAAGGGCTTTAGAAGAACTGAAACAGTTAGTTCAAGAAGCTCTCAGCTCTCACCAGTTTAGCAGTGCTCCACCAAAAAAAGAAGAGAAACAAAG TGTCAGTGTTATTCAAGAAACTTCAAAAACTGAAGCACCCGTTCCAGATTCTGATGTTGGTACTGATATGAAACCATCAGCAGAGAATCAAGAATCGAAA GTTGAAAAAACCCCAGAAAAAGAATCGCAAGAAGTGGCGAAAGAAGAGCAAAAGGTTGCATCTTCTTCACCAGAGGAAGTCCCTATATGGGGGATTCCTC TCTTGAAAGATGATAGAAGTGATGTGGTTCTCTTGAAATTCTTGAGGGCAAGGGATTTTAAGGTAAGAGATGCATTTGTAATGATCAAGAACACAATTCA ATGGAGGAGGGACTTCAAAATTGATGAGCTTGTTGATGAAGATCTAGGTGATGATTTGGAGAAAGTTGTGTTTATGCATGGTTATGATAGGGAAGGGCAT CCTGTGTGTTACAACGTATATGGTGAGTTTCAAAATAAAGAATTGTATCAGAAGACATTCTCCGATGAGGAGAAAAGATTGAAGTTTCTGAGGTGGCGGA TTCAGTTCTTGGAGAGGAGTATTAGGAAGCTTGATTTCAGTCCTGGTGGTATTTCTACCATCTTTCAGGTTAATGATCTGAAGAACTCTCCAGGACCTGG AAAGAGAGAGCTTAGGTTGGCTACTAAACAGGCTCTCCTTTCGCTTCAGGACAATTACCCTGAGTTTGTTGCCAAACAGGTGTTTATCAATGTCCCTTGG TGGTATCTTGCATTTTATACAGTGATGAGTCCATTCATGACGCAAAGGACCAAAAGCAAATTTGTTTTTGCAGGCCCATCAAATTCTGCTGAGACACTTT TCAAATATATATCTCCTGAGCAAGTGCCTATTCAGTATGGTGGCTTGTGCGTGGATTTCTGTGACTGCAACCCTGAATTTACTATTGCTGATCCTGCTAC TGATATAACTGTAAAACCAGCAACCAAGCAAACTGTGGAAATTATAATTTACGAGAAATGTATCCTTGTTTGGGAGTTGCGAGTTGTCGGATGGGAGGTG AGTTACAGCGCTGAGTTCATGCCCGAAGCTAAAGATGCATACACGATTATAATAACGAAACCCACAAAAATGTCCCCAACTGATGAGCCAGTGGTGTCTA ACAGCTTCAAAGTTGGTGAACTGGGGAAAATATTGCTCACAGTTGACAACCCCACCTCAAAGAAGAAGAAACTTCTTTACAGGTTCAAGATCAACCCCTT CTCAGATTGA
AA sequence Show only first row Show all	>Potri.013G105900.1 pacid=42812699 polypeptide=Potri.013G105900.1.p locus=Potri.013G105900 ID=Potri.013G105900.1.v4.1 annot-version=v4.1 MAEESSPPPPVLEQAPPSPAIEKDKEDLPPPAPVEEAESQAVQEKEEVPPQPAAAEQKESRSSSLAAMIEKEESFSPPPQPLFSPEEKTEVTEKSVATKE EVAVVPDTGKEKKVPLTLVSFKEESNALADLSHIERRALEELKQLVQEALSSHQFSSAPPKKEEKQSVSVIQETSKTEAPVPDSDVGTDMKPSAENQESK VEKTPEKESQEVAKEEQKVASSSPEEVPIWGIPLLKDDRSDVVLLKFLRARDFKVRDAFVMIKNTIQWRRDFKIDELVDEDLGDDLEKVVFMHGYDREGH PVCYNVYGEFQNKELYQKTFSDEEKRLKFLRWRIQFLERSIRKLDFSPGGISTIFQVNDLKNSPGPGKRELRLATKQALLSLQDNYPEFVAKQVFINVPW WYLAFYTVMSPFMTQRTKSKFVFAGPSNSAETLFKYISPEQVPIQYGGLCVDFCDCNPEFTIADPATDITVKPATKQTVEIIIYEKCILVWELRVVGWEV SYSAEFMPEAKDAYTIIITKPTKMSPTDEPVVSNSFKVGELGKILLTVDNPTSKKKKLLYRFKINPFSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72160			Sec14p-like phosphatidylinosit...		Potri.013G105900 [exp]	0	1
AT1G61260			Protein of unknown function (D...		Potri.001G406600 [exp]	11.83	0.7116
AT2G04850			Auxin-responsive family protei...		Potri.002G222600 [exp]	14.31	0.8159
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.001G448400 [exp]	15.16	0.8031
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.014G110400 [exp]	15.29	0.7816	GLP10.2
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Potri.002G178700 [exp]	21.90	0.7791
AT1G15530			Concanavalin A-like lectin pro...		Potri.015G083300 [exp]	28.84	0.7642
AT3G51980			ARM repeat superfamily protein...		Potri.003G158701 [exp]	33.24	0.7130
AT5G50130			NAD(P)-binding Rossmann-fold s...		Potri.012G087800 [exp]	35.55	0.7088
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Potri.004G075200 [exp]	39.03	0.7656	Pt-GAD.2
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Potri.014G066200 [exp]	39.54	0.7598

Compare expression of checked genes

Potri.013G105900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.