Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72160 457 / 7e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G09160 458 / 8e-154 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G22530 424 / 3e-140 PATL2 PATELLIN 2 (.1) AT1G72150 410 / 2e-136 PATL1 PATELLIN 1 (.1) AT3G51670 339 / 6e-111 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G30690 336 / 4e-108 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G34580 80 / 1e-15 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G01630 77 / 1e-15 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 77 / 9e-15 ATSFH3 SEC14-like 3 (.1.2.3) AT2G16380 77 / 1e-14 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G079500 [exp] 650 / 0 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G138200 [exp] 557 / 0 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011100 [exp] 551 / 0 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011101 [exp] 551 / 0 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G105900 [exp] 505 / 2e-173 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079300 [exp] 503 / 2e-172 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G461400 [exp] 392 / 9e-130 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.016G127700 [exp] 346 / 2e-113 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G224800 [exp] 303 / 2e-96 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001542 [exp] 518 / 3e-179 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10009453 [exp] 441 / 3e-152 AT1G72160 389 / 9e-134 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10001539 [exp] 385 / 4e-130 AT1G72160 490 / 1e-173 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10001269 [exp] 341 / 2e-111 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10012219 [exp] 334 / 5e-110 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10038435 [exp] 340 / 1e-109 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10031752 [exp] 326 / 1e-102 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10003552 [exp] 273 / 3e-84 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10033895 [exp] 236 / 4e-68 AT1G30690 218 / 1e-62 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10025540 [exp] 213 / 3e-64 AT4G09160 210 / 2e-63 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.013G106000.1 pacid=42811245 polypeptide=Potri.013G106000.1.p locus=Potri.013G106000 ID=Potri.013G106000.1.v4.1 annot-version=v4.1 ATGGCTGAGGAAACCCAGAAGGCAGCTACACCAGAAGCACAACCATCGGCCACGACAACAGAGGAAGTTGTGGTGGCGGAGGAGAAGCCTGCTGTGATCG AGAAAGAAACACCAGCACCTGTTCCTGAACCAGAGCCTGTGGCGCCAGAAAAGCCAGCAGTGGTTGAAGACGCTGTTGCCGTCGTTGAAGGTGCTGTTGA AGAGGAGAAACCAAAGGAGGAAACGACAGGGGAGGTGAAAATAACACAATCTGTTTCTTTTAAGGAAGAGACCAATGTTGTTGGTGAACTACCCGAGGCT CAAAAAAAGGCTCTTGATGATTTGAAACAACTCATTCAAGAGGCTCTTAATAAGCACGAGTTCACCACACCACCATCACCACCAGCAGCAGCAGCCAAGG AGGAGGAGAAGCCAGCTGAGACTGAGAAGGTAGAAGTCAAGGAGGCGGAGAAAACTGAGGCTCCTTCTACTAGCGAAGAGCCCAAAACTGAAGAGGAGCC TAAAGCTACTGAGGCTTCCACTCCACCTCCACCACCACCGGCGGTGGAGGAGAAGGTTGAGGTGAAAGAGGAAAAAGTGGAAGAGAAGGTAGAAGTAAAA GAAGAAGAAAAGAAGGCCGAGCCATCCGCTGCGGCGGAGACGGTGGTCGTTTCTGCTACAGAGGTGGAGAAGGTAGCTGCTGTGGATGAGGATGGAGCCA AGACAGTTGAGGCAATTGAGGAGACAATAGTATCTGTCTCTGCCCCTGCAACGGAAGAGGCTGCCCCAGCTGCAGAACCCGAGGCAGCTCCTGCAGAGGG GGAGCCTAAAAAAGAAGAGGAAGCGACCCCAGATGTTCCTCCGCCCACCCCGGAGGAAGTTTTCATCTGGGGAATCCCCCTTCTTGGCGATGAGAGGAGT GATGTGATCCTCTTGAAGTTCTTGAGAGCTAGAGATTTTAAAGTGAAGGATGCGTTTACTATGATCAAGAACACTGTCAAGTGGAGGAAGGAATTTGGAA TTGATGCTCTTCTTGAAGAAGACCTTGGAACTGAATTGGAAAAAGTGGTCTTTACCCATGGAGTTGATAAAGAAGGTCACCCTGTGTGTTACAATGCTTA TGGTGCTTTCCAGGATAAGGAGCTTTATCAGAATTGTTTTGCTGATGAAGAGAAGAGGGCGAAATTCCTGAAATGGAGGATTCAGTTCCTGGAGAAGAGT ATCAGGAAGTTAGACTTTAGTCCCAGTGGTATTTGCACCATTGTTCAGGTCAGTGATCTCAAGAATTCCCCTGGACCTGCCAAGACTGGACTCAGGCAAG CCACCAACCAGGCGCTTAGTTTGCTACAAGATAATTATCCTGAATTTGTGGCAAAAAATGTGTTCATAAATGTTCCATGGTGGTACCTAACATTCAGTAA GATGATCAGTCCTTTCCTGACACAAAGGACAAAGAGCAAGTTTGTATTTGCTGGTCCATCCAAATCTGCTGAAACACTTTTCAAATACATAGCTCCTGAA GATGTGCCAGTTCAGTATGGTGGACTGAGCAGGGATGGTGAATTCACAGTTGCTGACTCTGTCACAGATGTTACTATTAAGCCAACATCAAAGCACACTG TTGAATTCCCAGTTTCTGAGGCATGTATTCTTGCTTGGGAGCTTCGAGTTTTGGGTTGGGACGTTAGCTATGAAGCTGAATTCATGCCTAGCGCTGAGGA TGGTTACACTGTTATCGTATCAAAGACTAGGAAGGTTACCTCAACCGACGAGCCTGTGATCTCAGACACATTCAAAATTGGTGAACCTGGCAAGGTTGTG CTTACCATTGATAACCAAACCTCCAAGAAGAAGAAGCTCCTCTATAGATCGAAGACCAAACCCATTTCTGAATGA
AA sequence Show only first row Show all	>Potri.013G106000.1 pacid=42811245 polypeptide=Potri.013G106000.1.p locus=Potri.013G106000 ID=Potri.013G106000.1.v4.1 annot-version=v4.1 MAEETQKAATPEAQPSATTTEEVVVAEEKPAVIEKETPAPVPEPEPVAPEKPAVVEDAVAVVEGAVEEEKPKEETTGEVKITQSVSFKEETNVVGELPEA QKKALDDLKQLIQEALNKHEFTTPPSPPAAAAKEEEKPAETEKVEVKEAEKTEAPSTSEEPKTEEEPKATEASTPPPPPPAVEEKVEVKEEKVEEKVEVK EEEKKAEPSAAAETVVVSATEVEKVAAVDEDGAKTVEAIEETIVSVSAPATEEAAPAAEPEAAPAEGEPKKEEEATPDVPPPTPEEVFIWGIPLLGDERS DVILLKFLRARDFKVKDAFTMIKNTVKWRKEFGIDALLEEDLGTELEKVVFTHGVDKEGHPVCYNAYGAFQDKELYQNCFADEEKRAKFLKWRIQFLEKS IRKLDFSPSGICTIVQVSDLKNSPGPAKTGLRQATNQALSLLQDNYPEFVAKNVFINVPWWYLTFSKMISPFLTQRTKSKFVFAGPSKSAETLFKYIAPE DVPVQYGGLSRDGEFTVADSVTDVTIKPTSKHTVEFPVSEACILAWELRVLGWDVSYEAEFMPSAEDGYTVIVSKTRKVTSTDEPVISDTFKIGEPGKVV LTIDNQTSKKKKLLYRSKTKPISE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72160			Sec14p-like phosphatidylinosit...		Potri.013G106000 [exp]	0	1
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.016G066500 [exp]	9.94	0.5769
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Potri.013G046500 [exp]	13.19	0.6031
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Potri.010G170000 [exp]	17.23	0.5457	DIM.3
AT3G15040			Protein of unknown function, D...		Potri.016G076300 [exp]	18.00	0.5493
AT5G40740			unknown protein		Potri.001G337700 [exp]	21.81	0.5528
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Potri.003G073700 [exp]	22.80	0.5640
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.009G009900 [exp]	35.66	0.5519
AT4G16490			ARM repeat superfamily protein...		Potri.016G010800 [exp]	46.90	0.5477
AT4G17260			Lactate/malate dehydrogenase f...		Potri.001G122400 [exp]	57.23	0.5202
AT5G14980			alpha/beta-Hydrolases superfam...		Potri.001G466700 [exp]	77.03	0.4926

Compare expression of checked genes

Potri.013G106000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.