Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22540 632 / 0 Major facilitator superfamily protein (.1) AT1G22550 570 / 0 Major facilitator superfamily protein (.1) AT1G72140 563 / 0 Major facilitator superfamily protein (.1) AT1G72120 552 / 0 Major facilitator superfamily protein (.1) AT1G72125 551 / 0 Major facilitator superfamily protein (.1) AT1G22570 546 / 0 Major facilitator superfamily protein (.1) AT1G72130 531 / 0 Major facilitator superfamily protein (.1.2) AT3G54450 455 / 7e-155 Major facilitator superfamily protein (.1) AT2G40460 402 / 1e-133 Major facilitator superfamily protein (.1) AT5G01180 399 / 1e-132 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G106500 [exp] 1066 / 0 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106600 [exp] 770 / 0 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 745 / 0 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079551 [exp] 738 / 0 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106700 [exp] 693 / 0 AT1G22540 612 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079700 [exp] 677 / 0 AT1G22540 547 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 673 / 0 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106925 [exp] 642 / 0 AT1G22540 605 / 0.0 Major facilitator superfamily protein (.1) Potri.003G197333 [exp] 462 / 2e-157 AT3G54450 663 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016932 [exp] 658 / 0 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10008252 [exp] 629 / 0 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 554 / 0 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 449 / 3e-152 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1) Lus10039521 [exp] 442 / 2e-149 AT3G54450 612 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 408 / 3e-136 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10018207 [exp] 410 / 1e-134 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10034206 [exp] 399 / 2e-132 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10040099 [exp] 399 / 2e-132 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10024340 [exp] 397 / 1e-131 AT2G37900 775 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.013G106400.1 pacid=42811540 polypeptide=Potri.013G106400.1.p locus=Potri.013G106400 ID=Potri.013G106400.1.v4.1 annot-version=v4.1 ATGTCCATTTCTAACCTCTCCAGTTCAGAGACACAAGAGGTCCGAACTCCACTCCTAAACGACACTGTTGATGACTGCGTTGATTATAAGGGCAACCCAG TTTGTAGATACAACTCTGGTGGATGGAGGTCTGCATCTTTCATTATAGGTGTGGAGGTGGCAGAGAGGTTTGCTTTTTATGGAATCTCTTCCAACTTAAT AATGTATTTAACTGGGCCGTTGGGTCAATCAACCATTACTGCGGCTAAGAATGTGAACGTATGGTCAGGCACAGCGTCGTTTCTGCCCTTGTTCGGTGCA TTTGTTGCTGATTCTTTTCTTGGAAGATGCAGGACTATTATTATTGCCTCACTTATCTACATTTTGGGACTTGGCTTGTTGACTCTATCAGCTATGCTTC CTACATCTGACTGTCAAAGTGACAGTATGTCCTGTTCTTCTAATACACTGCAAGTGATTTTATTCTTTATTGCTCTCTATCTAGTAGCACTTGGCCAAGG TGGGCACAAGCCTTGTGTCCCGGCTTTTGGAGCGGATCAATTTGATAGACAAGACACCAAAGAGTACAAAGCCAAAAGCTCATTCTTCAATTGGTGGTAT TTTTTTATGAGTTCAGGCATCTTAGTATCACTACTGGTTTTAACATACATTCAAGACAATCTTAGTTGGAGTCTTGGATTTGGAATCCCATTCATTATGA TGATCTGTGCACTGATCATCTTCTTACTGGGATCAAAGAAATATCGGTACAGTGTTAAAAGGGAAGGGAACAACGCACTTTTGAGAATTGCTCGGGTCTT TGTGGCAGCTTTCAGGAATTGGCGATTTACTCCTTCCTCAATAGCTTCTGAGGAAGAAGGTCGTGGAACTGTACCTCACCAAAGTTATGAGCAGTTCAAG TTCCTAAACAATGCGCTGCTTACAACAGATGGCTCAAAAGAAGATCAGAAGGTTTGTACCTTTAGTGAGGTTGAAGAAGCCAAGGCAGTTCTCAGGCTTA TTCCAATATGGACTACATGCTTGGGATTTGCTATTGTGCTTCCACAGTCCTCAACTTTCTTTGTCAAGCAAGCAGCAACCATGGATAGATCAATTTCACC AGGTTTCGAGATACCAGCAGCTTCACTTGAAAGCTTTAGCAGCATTTCCATGATCCTCTGTATTGCTATCTATGACCGTCTCTTTGTTCCTGTTGCAAGA GCTTTAACAAGGAAACCATCTGGCATTTCAATGCTTCAGAGAATTGGAACTGGGATGTTTTTATCTGCTGTTTCGATAGCATTTGCTGCTCTAGTTGAGA TGAAAAGGCTCGAAATCGCTCAAGAATCTGGTCTTGTCAATGAACCAAATGTGACTGTTCCAATGAGTGTTTGGTGGTTAGTTCCTTCATATGCCTTGTT CGGAGTTGCTGATGTCTTTACCATGGTTGGTCTGCAAGAACTTTTCTATGATCAGGTCCCTAGTGATTTAAAGAGTGTTGGTCTTTCACTATACCTCAGT ATCTTTGGTGTAGGAAAATTTCTTAGCAGCTTTCTCATCTCTGTGATTGAGAAAGCGACTGGTGGCATTGGCTGTTATAGCTGGTTCAACAATAATTTGA ACCGGGCTCATCTTGATTATTTTTATTGGATACTTGCTGCGCTAAGTGTGGTGGAATTGATTATGTACATGTATTATACAAGATTTTACATTTATAGTAG GGATGAGAGAATCTAA
AA sequence Show only first row Show all	>Potri.013G106400.1 pacid=42811540 polypeptide=Potri.013G106400.1.p locus=Potri.013G106400 ID=Potri.013G106400.1.v4.1 annot-version=v4.1 MSISNLSSSETQEVRTPLLNDTVDDCVDYKGNPVCRYNSGGWRSASFIIGVEVAERFAFYGISSNLIMYLTGPLGQSTITAAKNVNVWSGTASFLPLFGA FVADSFLGRCRTIIIASLIYILGLGLLTLSAMLPTSDCQSDSMSCSSNTLQVILFFIALYLVALGQGGHKPCVPAFGADQFDRQDTKEYKAKSSFFNWWY FFMSSGILVSLLVLTYIQDNLSWSLGFGIPFIMMICALIIFLLGSKKYRYSVKREGNNALLRIARVFVAAFRNWRFTPSSIASEEEGRGTVPHQSYEQFK FLNNALLTTDGSKEDQKVCTFSEVEEAKAVLRLIPIWTTCLGFAIVLPQSSTFFVKQAATMDRSISPGFEIPAASLESFSSISMILCIAIYDRLFVPVAR ALTRKPSGISMLQRIGTGMFLSAVSIAFAALVEMKRLEIAQESGLVNEPNVTVPMSVWWLVPSYALFGVADVFTMVGLQELFYDQVPSDLKSVGLSLYLS IFGVGKFLSSFLISVIEKATGGIGCYSWFNNNLNRAHLDYFYWILAALSVVELIMYMYYTRFYIYSRDERI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22540			Major facilitator superfamily ...		Potri.013G106400 [exp]	0	1
AT3G24240			Leucine-rich repeat receptor-l...		Potri.003G175700 [exp]	5.83	0.8855
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.010G250500 [exp]	19.07	0.8553
AT2G41705			camphor resistance CrcB family...		Potri.002G086800 [exp]	21.56	0.8780
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Potri.007G036300 [exp]	26.83	0.8720
AT1G54120			unknown protein		Potri.001G167600 [exp]	27.85	0.8634
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Potri.001G249700 [exp]	29.32	0.8618	CYP86.5
AT3G04440			Plasma-membrane choline transp...		Potri.019G040500 [exp]	30.88	0.8683
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Potri.003G156200 [exp]	31.55	0.8779
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.009G062901 [exp]	39.64	0.8027
AT1G22540			Major facilitator superfamily ...		Potri.013G106500 [exp]	41.23	0.8149

Compare expression of checked genes

Potri.013G106400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.