Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22540 665 / 0 Major facilitator superfamily protein (.1) AT1G72125 601 / 0 Major facilitator superfamily protein (.1) AT1G72120 586 / 0 Major facilitator superfamily protein (.1) AT1G22550 582 / 0 Major facilitator superfamily protein (.1) AT1G72140 582 / 0 Major facilitator superfamily protein (.1) AT1G22570 565 / 0 Major facilitator superfamily protein (.1) AT1G72130 534 / 0 Major facilitator superfamily protein (.1.2) AT3G54450 454 / 1e-154 Major facilitator superfamily protein (.1) AT3G54140 408 / 2e-136 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 400 / 2e-133 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G079551 [exp] 889 / 0 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 823 / 0 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 760 / 0 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 748 / 0 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106700 [exp] 734 / 0 AT1G22540 612 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079700 [exp] 718 / 0 AT1G22540 547 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 709 / 0 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106925 [exp] 699 / 0 AT1G22540 605 / 0.0 Major facilitator superfamily protein (.1) Potri.003G197333 [exp] 473 / 5e-162 AT3G54450 663 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016932 [exp] 711 / 0 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10008252 [exp] 681 / 0 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 565 / 0 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 454 / 4e-154 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1) Lus10039521 [exp] 438 / 8e-148 AT3G54450 612 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 410 / 7e-137 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10040099 [exp] 407 / 9e-136 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 402 / 2e-133 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10018207 [exp] 402 / 6e-132 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10021132 [exp] 394 / 1e-130 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.013G106600.1 pacid=42811108 polypeptide=Potri.013G106600.1.p locus=Potri.013G106600 ID=Potri.013G106600.1.v4.1 annot-version=v4.1 ATGTCCTCCTCTAACCAAACTCCACTCCTCTCATACGACATCGTTGATGGTTCTGTCGACTATAAAAGCCGACCCGCTTATAGATCCAATTCTGGTGGAT GGAGATCCGCATCTTTCATCATAGGTGTGGAAGTTGCAGAGAGATTTGCGTATTATGGAATTTCTTCCAACTTAATTACGTATTTGACCGGCCCGTTGGG TCAGTCAACGGCTACTGCGGCGGAGAACGTGAATGTGTGGGCGGGCACGGCGTCGTTGCTGCCCTTGTTAGGTGCATTTGTTGCTGATTCTTTTCTTGGC AGATACAGAACCATCATTTTCGCTTCGCTTATTTACATTTTGGGACTTGGCTTGTTGACTCTATCAGCTCTACTTCCTTCCCACGCTGCTGCTACTGGCT TCCGAAGCACTAATTTGCCAAGTTCTCCGGTTCCATTTCAACTGATTTTGTTCTTCTTTGCTCTCTATTTAGTAGCGATTGGCCAAAGCGGGCACAAACC TTGCGTTCAGGCTTTTGGAGCGGATCAGTTTGATGGACAGGACCCTCAGGAATCCAAAGCAAAAAGCTCTTTCTTCAATTGGTGGTATTGTTTCATGTGT GCCGGAACAGTAGTAACATTGCTGGTTTTAAACTACATCCAAGACAATCTTAACTGGGGTCTTGGATTTGGAATCCCTTGTGCTGTGATGGTTATTGCAC TTATCATCTTCTTACTTGGCACTAAGACGTATCGATATAGTATAAAAGGGGATGAGAAAAGCGCATTTCTGAGGATTGGTTGGGTTTTTGTGTCTTCGAT TAGGAATTGGAGAACCACCCCTTCTGCAATAGCATTTGAGGAAGAAACCCGTGGAACCCTACCACACCAAAGTTCTGAGCAGTACAAGTTCCTCAACAAA GCCCTGCTTGCACCAAATGGCTTAAAGGAAGATGGGAAGGTATGCAGCCTCGGTGATGTTGAAGAAGCAAAGGCATTACTTAGGCTTGTTCCAATATGGG CTACGTGCTTGGTATTTGCTATAGTGTTTGCACAGACCTCAACTTTCTTCACTAAGCAAGGAGTTACTATGGATAGATCGATTTCACCCAGTTTGGACTT GCCAGCGGCTTCACTTCAATCTTTTATCAGCCTCTCCATTGTACTCTTCATTCCAATCTATGATCGTGTCCTTGTTCCTATAGCAAGAGCTTTAACCAGA AAACCCTCTGGCATTACAATGCTTCAGAGAATTGGAAGTGGTATGTTTATATCTGTTGTGGCTATGATTGTTGCTGCTCTCGTTGAGATGAAGAGGCTCA AAACTGCCCAAGAACATGGACTAGTTGATCTGCCAAATGTGACGATTCCAATGAGTGTTTGGTGGTTAATTCCTCAATATGTCTTGTTTGGAGTTGCCGA AGCGTTTACCATGGTTGGCCTGCAAGAGTTTTTCTATGATCAGGTCCCCAGTGACTTGAGGAGTGTTGGTCTTTCACTCTACCTTAGTATCTTTGGTGTT GGAAGCTTTCTAAGCAGCTTTCTTATCTCTATCATTGAGAAAGCAACTGGTGGGAATGGCCGATATAGCTGGTTTGCTAATAATCTGAATCGGGCTCATC TTGATTATTTCTATTGGCTGCTAGCTGGGTTGAGTGCAGTACAATTGGTTGCTTATGTATGTTTTGCAAAATCTTACATTTATAATAGGGGAGGCACTGT ATAA
AA sequence Show only first row Show all	>Potri.013G106600.1 pacid=42811108 polypeptide=Potri.013G106600.1.p locus=Potri.013G106600 ID=Potri.013G106600.1.v4.1 annot-version=v4.1 MSSSNQTPLLSYDIVDGSVDYKSRPAYRSNSGGWRSASFIIGVEVAERFAYYGISSNLITYLTGPLGQSTATAAENVNVWAGTASLLPLLGAFVADSFLG RYRTIIFASLIYILGLGLLTLSALLPSHAAATGFRSTNLPSSPVPFQLILFFFALYLVAIGQSGHKPCVQAFGADQFDGQDPQESKAKSSFFNWWYCFMC AGTVVTLLVLNYIQDNLNWGLGFGIPCAVMVIALIIFLLGTKTYRYSIKGDEKSAFLRIGWVFVSSIRNWRTTPSAIAFEEETRGTLPHQSSEQYKFLNK ALLAPNGLKEDGKVCSLGDVEEAKALLRLVPIWATCLVFAIVFAQTSTFFTKQGVTMDRSISPSLDLPAASLQSFISLSIVLFIPIYDRVLVPIARALTR KPSGITMLQRIGSGMFISVVAMIVAALVEMKRLKTAQEHGLVDLPNVTIPMSVWWLIPQYVLFGVAEAFTMVGLQEFFYDQVPSDLRSVGLSLYLSIFGV GSFLSSFLISIIEKATGGNGRYSWFANNLNRAHLDYFYWLLAGLSAVQLVAYVCFAKSYIYNRGGTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22540			Major facilitator superfamily ...		Potri.013G106600 [exp]	0	1
AT3G53420		PIP2;1, PIP2A	PLASMA MEMBRANE INTRINSIC PROT...		Potri.008G039600 [exp]	2.64	0.8995	Pt-MDPIP1.2
AT1G02816			Protein of unknown function, D...		Potri.002G203400 [exp]	6.16	0.7863
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Potri.013G009900 [exp]	9.74	0.7614
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.010G245332 [exp]	20.32	0.8192
AT5G51110			Transcriptional coactivator/pt...		Potri.012G112400 [exp]	22.62	0.8401
AT5G01650			Tautomerase/MIF superfamily pr...		Potri.006G104600 [exp]	33.76	0.7268
AT2G46970	bHLH	PIL1, bHLH124	phytochrome interacting factor...		Potri.014G111400 [exp]	34.17	0.8238
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Potri.014G150300 [exp]	43.95	0.7989	ARA.2
AT5G10170		ATMIPS3	MYO-INOSITOL-1-PHOSTPATE SYNTH...		Potri.005G078700 [exp]	45.51	0.7926	MIPS.1
AT1G51060		HTA10	histone H2A 10 (.1)		Potri.001G415700 [exp]	60.03	0.7572	HTA903

Compare expression of checked genes

Potri.013G106600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.