Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22540 604 / 0 Major facilitator superfamily protein (.1) AT1G22550 549 / 0 Major facilitator superfamily protein (.1) AT1G72125 548 / 0 Major facilitator superfamily protein (.1) AT1G72120 542 / 0 Major facilitator superfamily protein (.1) AT1G72140 532 / 0 Major facilitator superfamily protein (.1) AT1G22570 528 / 0 Major facilitator superfamily protein (.1) AT1G72130 499 / 1e-172 Major facilitator superfamily protein (.1.2) AT3G54450 451 / 2e-153 Major facilitator superfamily protein (.1) AT3G54140 404 / 4e-135 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 394 / 6e-131 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G106700 [exp] 791 / 0 AT1G22540 612 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 736 / 0 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106600 [exp] 703 / 0 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079551 [exp] 682 / 0 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 654 / 0 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 642 / 0 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 637 / 0 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079700 [exp] 635 / 0 AT1G22540 547 / 0.0 Major facilitator superfamily protein (.1) Potri.003G197333 [exp] 444 / 2e-150 AT3G54450 663 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016932 [exp] 615 / 0 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10008252 [exp] 599 / 0 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 523 / 0 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 424 / 1e-142 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1) Lus10039521 [exp] 418 / 4e-140 AT3G54450 612 / 0.0 Major facilitator superfamily protein (.1) Lus10018207 [exp] 406 / 2e-133 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10035516 [exp] 399 / 1e-132 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10040099 [exp] 395 / 3e-131 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 390 / 3e-129 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011786 [exp] 387 / 8e-128 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.013G106925.1 pacid=42812393 polypeptide=Potri.013G106925.1.p locus=Potri.013G106925 ID=Potri.013G106925.1.v4.1 annot-version=v4.1 ATGGCCACCGAAACTCCACTACTCTTGCCCTATGCCGTCGATAGCTCAGTTGACTACAAAGGCTTCTCCAATTCTGGTGGATGGAAATGCGCATTTTTAA TTATAGGTGTTGAAGTTGCAGAGAGGTCTGCTTATTTTGGGATATCAGGGAACTTGATAACGTATTTGACAGGGCCTTTAGGGCAGTCAACGGTTACGGC AGCGGAGAATTTGAACTTGTGGTCGGGAACAGCGTGGTTGCTGCCTTTGTTAGGTGCCTTTGTAGCTGATTCGTTCCTTGGCAGATACAGAACCATTATT GTTGCAGCATCTATCTATATCTTGGGACTCAGCTTGTTGACTCTATCAGCCGTGCTTCCTTCTGTCCGTGCTCATGACTGCCAAAGTGCCGATACTATCC AGTTGTGCTCTCCTGATCCAAGTCTCATATTGTTCTTCTTTGCTCTCTATCTAGTAGCATTTGGACAGGGTGGGTTCAGGCCTTGTGTTCAGGCCTTCGG AGCTGACCAGTTTGATGGGCAAGACCCTGAGGAGCGCAAATCCAGAAGTTCATTCTTCAATTGGTGGAATTTTGGTATGAATGCTGGCCTAATAGTGATC CTGCCGTTCTTAAACTATATCCAAGACAACCTTAATTGGGGTTTCGGATTTGGAATCCCATGTGTTATTATGGCTGTTTCCCTTGTAATTTTCTTACTTG GAACCAAGACGTATAGGTATAGTATCAGAAGGGAGGAGGAACATCCGTTTCTGAGAATTGGTCGAGTCCTTGTTAAAGCTATTAAGAATTGGCGAATCTC TCCTGCAGTATCTTTCAAGGAAGATGCTAGCTGCATCGTGTCTCGCCAAAAGTCAGAGCAATTCGAGTTCCTTAATAAAGCTCTGCTTGAAATCAATGGC TCAGAGGATAGCTGGATGGCCTGTACCCCTAAAGAAGTTGAAGAAGCTAAGGCAGTGCTCAGGCTTGTTCCTATATGGACTAGCTGCTTGATATTTGCTA CTGTGGGTTCACAGGTGGGAACTTTCTTTACTAAGCAAGCAAGAACAATGAATAGATCAATTTCAGAACGTCTTGAATTTCCTGCGGCTTCAATTCAATT ATCAATTCCCTTGGCAATTGTTGTCTTAGTTCCTATCTATGATCGTGTCTTTGTCCCTGTAGCAAGGAAATTATCTGGGGAACATTCTGGCATTACAATG CTTCAGAGAATTGGAACTGGGTTATTCTTATCTGTTCTGGCCATGGTAGTTTCTGCTCTAGTTGAAATGAAGAGGCTTAAAACTGCTGAGGAACACGGAC TAGTTGATATGCCAAATGTGACGATTCCAATGAGTGGTTGGTGGTTAATTCCTCAACTTGTCTTGCTTGGAGCTGCTGATGTGTTTACCATAATTGGTCT GCAAGAATTCTTCTATGATCAGGTCCCAAGTGAACTAAAGAGTGTAGGTCTTGCTCTCTTCCTCAGTGTCGTTGGCGTAGGACACTTTCTGAGCGGCTTT CTCATCTCTATAATTGACAAGACAACTGGTAAGGATGGTGATGATAGCTGGTTTGCAAATAACCTGAATCGGGCTCACCTTGATTACTTTTACTGGATAC TAGCTGTCTTAAGTGTTGTTCAGCTGGTTGCTTTCTTGTATTTTTCAAAATCTTACATTTATAAGAGGGGAAGCATAGTATAA
AA sequence Show only first row Show all	>Potri.013G106925.1 pacid=42812393 polypeptide=Potri.013G106925.1.p locus=Potri.013G106925 ID=Potri.013G106925.1.v4.1 annot-version=v4.1 MATETPLLLPYAVDSSVDYKGFSNSGGWKCAFLIIGVEVAERSAYFGISGNLITYLTGPLGQSTVTAAENLNLWSGTAWLLPLLGAFVADSFLGRYRTII VAASIYILGLSLLTLSAVLPSVRAHDCQSADTIQLCSPDPSLILFFFALYLVAFGQGGFRPCVQAFGADQFDGQDPEERKSRSSFFNWWNFGMNAGLIVI LPFLNYIQDNLNWGFGFGIPCVIMAVSLVIFLLGTKTYRYSIRREEEHPFLRIGRVLVKAIKNWRISPAVSFKEDASCIVSRQKSEQFEFLNKALLEING SEDSWMACTPKEVEEAKAVLRLVPIWTSCLIFATVGSQVGTFFTKQARTMNRSISERLEFPAASIQLSIPLAIVVLVPIYDRVFVPVARKLSGEHSGITM LQRIGTGLFLSVLAMVVSALVEMKRLKTAEEHGLVDMPNVTIPMSGWWLIPQLVLLGAADVFTIIGLQEFFYDQVPSELKSVGLALFLSVVGVGHFLSGF LISIIDKTTGKDGDDSWFANNLNRAHLDYFYWILAVLSVVQLVAFLYFSKSYIYKRGSIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22540			Major facilitator superfamily ...		Potri.013G106925 [exp]	0	1
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Potri.008G019400 [exp]	6.70	0.6750	VAMP727.1
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Potri.005G256500 [exp]	16.12	0.7037
AT1G08460		HDA8, HDA08, AT...	histone deacetylase 8 (.1)		Potri.009G020500 [exp]	34.87	0.5838
AT1G30540			Actin-like ATPase superfamily ...		Potri.001G466900 [exp]	39.68	0.5986
AT2G23810		TET8	tetraspanin8 (.1)		Potri.006G177900 [exp]	46.58	0.6214
AT4G04320			malonyl-CoA decarboxylase fami...		Potri.004G005500 [exp]	50.54	0.5633
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.001G073800 [exp]	55.71	0.5900
AT1G18720			Protein of unknown function (D...		Potri.010G166500 [exp]	57.96	0.6180
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Potri.015G052800 [exp]	60.66	0.6099	DR1.1
AT3G57710			Protein kinase superfamily pro...		Potri.002G003300 [exp]	64.06	0.5033

Compare expression of checked genes

Potri.013G106925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.