Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22540 670 / 0 Major facilitator superfamily protein (.1) AT1G22550 592 / 0 Major facilitator superfamily protein (.1) AT1G72125 591 / 0 Major facilitator superfamily protein (.1) AT1G72140 581 / 0 Major facilitator superfamily protein (.1) AT1G72120 566 / 0 Major facilitator superfamily protein (.1) AT1G22570 561 / 0 Major facilitator superfamily protein (.1) AT1G72130 535 / 0 Major facilitator superfamily protein (.1.2) AT3G54450 468 / 6e-160 Major facilitator superfamily protein (.1) AT3G54140 416 / 2e-139 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G37900 409 / 1e-136 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G106600 [exp] 832 / 0 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079551 [exp] 784 / 0 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 758 / 0 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106700 [exp] 755 / 0 AT1G22540 612 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 746 / 0 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106925 [exp] 744 / 0 AT1G22540 605 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 721 / 0 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079700 [exp] 700 / 0 AT1G22540 547 / 0.0 Major facilitator superfamily protein (.1) Potri.003G197333 [exp] 474 / 4e-162 AT3G54450 663 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016932 [exp] 713 / 0 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10008252 [exp] 686 / 0 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 578 / 0 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 460 / 1e-156 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1) Lus10039521 [exp] 446 / 5e-151 AT3G54450 612 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 413 / 3e-138 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10018207 [exp] 413 / 3e-136 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10023743 [exp] 409 / 4e-136 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10034206 [exp] 407 / 2e-135 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10011786 [exp] 405 / 7e-135 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.013G107050.1 pacid=42810935 polypeptide=Potri.013G107050.1.p locus=Potri.013G107050 ID=Potri.013G107050.1.v4.1 annot-version=v4.1 ATGCCCAGTTCTGACACACAAACTCCCCTCTTACACGAAGCTGTTGATGGCTGCGTTGACTACAATGGCCGCCCTGTTTACAGGTCCATCTCTGGTGGAT GGCGATCGGCTTTTTTCATAATAGGTGTGGAAGTTGCAGAGAGGTCAGCGTATTATGGGATATCTTCCAACTTAATAACTTATTTGACGGGAGCGCTTGG CCAGTCAACTGCTACTGCTGCAGAGAATGTAAATGTCTGGTCAGGAACGACGATGTTACTTCCTCTGTTGGGTGCATTTATTGCTGATTCTTTCCTTGGT AGATACAGGACTATTGTTGTTGCTTCCTGTATTTACATTTTGGGACTGAGCTTGTTGACTCTGTCAGCAGTGCTTCCTTCTTCTAGAGATTCTGGCTGCC AAACTGCTGATGCTATCAGCTTGTGCTCTCCTGATCCCCGACAAGTAATTTTATTCTTCTTTTCTCTCTATATCGTAGCAATTGGTCAAGGAGGTCACAA GCCGTGTGTTCAGGCTTTTGGAGCTGATCAGTTTGATGGGCAACATCCCGAGGAAAGCAAAGCCAAAAGCTCATTCTTCAATTGGTGGTATTTTTCTATG AATTCAGGGATGGTGGTAGCGCTGTTAATCTTGAACTACATCCAAGACAACCTTAATTGGGGACTTGGATTTGGAATCCCATGTATTATAATGGTTGGTG CACTTATTGTCTTCTTACTTGGAACTAAGACATATAGGTATGGTATCAAAACGGCAGAGAGAAGTGCATTTCTGAGAATTGGCCAGGTATTTGTTGAAGC TGTAAGGAATTGGCGAACTAATTCTTCTGCCATAGATTGCAGGGAAGAAGAAGCTCTTGGCATCGTACCTCACCAATGTTCCGAGCAATTCAAGTTTCTC AACAAAGCCCTGCTTACCCCAAATGGCTCAAAGGAAGACGGGAAAGTTTGTAGCATTGGTGAAGTTGAAGAAGCTAAGGCAGTACTTAGGCTTGTTCCCA TATGGACTACATGCTTGATATATGGTATTGTTTTTGCACAGTCCTCGACTTTCTTTACTAAGCAAGGAGCAACCATGGATAGATCGATTTCACCAGGTCT TGATGTTCCTGCGGCATCACTTCAATCCCTCATTTCCCTTTCCATTGTTTTTCTCATTCCATTCTATGACCGAGTCCTTGTTCCTACGGCAAGAGCTATA ACCAGGAAACCTTCAGGCATTACAATGCTTCAGAGAATTGGAACTGGGATATTTTTATCTGCTCTGTCTATGGTTCTTTCTGCTGTTGTTGAGATGAAGA GACTGAAAACTGCTCGTGAATATGGACTAGTTGATCTGCCAAATACAACAATTCCAATGAGCGTTTGCTGGTTAGTTCCACAATATATCGTGTATGGAGC TGCAGATGTTTTCGCCATGGTTGGTCTCCAAGAATTTTTCTACGATCAGGTCCCAAGTGAATTGAGGAGTGTTGGTCTTTCACTCTACCTTAGTATCTTT GGTGTAGGAAGCTTTCTAAGCAGTTTTCTTATCTCTGGCATTGAAAAAGCAACTGGTGGGGATGGTCATGGCAGCTGGTTTGCTGATAACCTGAATCGGG CTCATCTTGATTACTTTTATTGGCTACTGGCTGGGCTAAGTGTTGTACAGTTAGTTGCTTTCCTGTACTTTTCAAAGTCTTACATATATAACAGGGAAGG CACTAGATAA
AA sequence Show only first row Show all	>Potri.013G107050.1 pacid=42810935 polypeptide=Potri.013G107050.1.p locus=Potri.013G107050 ID=Potri.013G107050.1.v4.1 annot-version=v4.1 MPSSDTQTPLLHEAVDGCVDYNGRPVYRSISGGWRSAFFIIGVEVAERSAYYGISSNLITYLTGALGQSTATAAENVNVWSGTTMLLPLLGAFIADSFLG RYRTIVVASCIYILGLSLLTLSAVLPSSRDSGCQTADAISLCSPDPRQVILFFFSLYIVAIGQGGHKPCVQAFGADQFDGQHPEESKAKSSFFNWWYFSM NSGMVVALLILNYIQDNLNWGLGFGIPCIIMVGALIVFLLGTKTYRYGIKTAERSAFLRIGQVFVEAVRNWRTNSSAIDCREEEALGIVPHQCSEQFKFL NKALLTPNGSKEDGKVCSIGEVEEAKAVLRLVPIWTTCLIYGIVFAQSSTFFTKQGATMDRSISPGLDVPAASLQSLISLSIVFLIPFYDRVLVPTARAI TRKPSGITMLQRIGTGIFLSALSMVLSAVVEMKRLKTAREYGLVDLPNTTIPMSVCWLVPQYIVYGAADVFAMVGLQEFFYDQVPSELRSVGLSLYLSIF GVGSFLSSFLISGIEKATGGDGHGSWFADNLNRAHLDYFYWLLAGLSVVQLVAFLYFSKSYIYNREGTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22540			Major facilitator superfamily ...		Potri.013G107050 [exp]	0	1
AT4G22990			Major Facilitator Superfamily ...		Potri.001G111400 [exp]	1.41	0.8191
AT4G30470			NAD(P)-binding Rossmann-fold s...		Potri.006G178700 [exp]	3.46	0.7494
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.010G180600 [exp]	5.29	0.7371
AT3G30390			Transmembrane amino acid trans...		Potri.017G106300 [exp]	7.48	0.7189
AT4G28690			unknown protein		Potri.002G255400 [exp]	9.48	0.7149
AT1G19025			DNA repair metallo-beta-lactam...		Potri.007G106700 [exp]	9.79	0.7031
AT1G73760			RING/U-box superfamily protein...		Potri.015G043900 [exp]	10.95	0.7205
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.010G192600 [exp]	13.78	0.6950
AT5G20260			Exostosin family protein (.1)		Potri.006G064850 [exp]	15.16	0.7259
AT4G03020			transducin family protein / WD...		Potri.010G026800 [exp]	15.42	0.7068

Compare expression of checked genes

Potri.013G107050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.