Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16510 76 / 2e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G09070 70 / 2e-13 (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, soybean gene regulated by cold-2 (.1) AT4G15755 59 / 6e-10 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G15740 58 / 3e-09 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G33320 45 / 4e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G070400 [exp] 137 / 7e-38 AT3G16510 82 / 4e-17 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.003G160400 [exp] 127 / 1e-33 AT3G16510 72 / 8e-14 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G024200 [exp] 91 / 6e-21 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G209800 [exp] 74 / 6e-15 AT3G16510 137 / 8e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G018600 [exp] 74 / 8e-15 AT1G09070 157 / 5e-46 soybean gene regulated by cold-2 (.1) Potri.014G078700 [exp] 50 / 3e-07 AT2G45760 116 / 1e-32 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.019G021300 [exp] 49 / 2e-06 AT3G04360 213 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G155300 [exp] 48 / 2e-06 AT2G45760 120 / 4e-34 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.013G048400 [exp] 48 / 4e-06 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004500 [exp] 77 / 2e-16 AT1G09070 179 / 2e-55 soybean gene regulated by cold-2 (.1) Lus10029901 [exp] 76 / 2e-15 AT1G09070 172 / 6e-52 soybean gene regulated by cold-2 (.1) Lus10006523 [exp] 67 / 3e-12 AT3G16510 147 / 1e-41 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009818 [exp] 48 / 2e-06 AT2G45760 120 / 6e-34 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10040924 [exp] 47 / 4e-06 AT2G45760 119 / 3e-33 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10032780 [exp] 46 / 2e-05 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10003570 [exp] 46 / 2e-05 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10036571 [exp] 44 / 6e-05 AT2G45760 105 / 2e-28 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10040923 [exp] 44 / 6e-05 AT2G45760 110 / 4e-30 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10027502 [exp] 41 / 0.0006 AT5G23950 164 / 8e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.013G107175.1 pacid=42811559 polypeptide=Potri.013G107175.1.p locus=Potri.013G107175 ID=Potri.013G107175.1.v4.1 annot-version=v4.1 ATGGATTCAGGCTCCATGGAACTCAAAGTGATGTATTGTAAAGACGTAAACTCATTCAATTTCTTCAAAAAACTCTTAGTTTATGTTCTTGTTTCAATCG TGAGAGATGATGGTGGTGGTGATACTGATAAAAAACAACTGGAGCTGCAGAAACAGCAACAAAGAACACCCACTGACACAGAAGGAGATGGGAATCCCGA ATGGAATCACCAGATGCATTTCGATCTGACCGAGGTTTCATTTCAAGATTGTGATCATTTCTTTATCCACTTCGATCTCTGTCATGAAGGTCTCTATTTT GGAGACAAAACTATTGGGAAAGTTCGTGTACCCTTGAAAGATTTGATCCAGGAGGCTAATGGAATTGTCAGGTTTTTGAGTTACGAGGTTCGAACTCCAG ATGGAAAACCCAATGGCGTGCTAAAATTCTCCTGTAAGGTGAAGAACATGGGGACTAATTCTTCACAAGCTGGCATCACTGGGTATCCAATAGTCAATAA TCAGCCATATCCAACATCGGAAGTTCAAAGTTTATCAGAACAAGCTCATTATCCAACGTTGGATTTGGAAGGTAACTCCCAGGAAACAGACACTGTGTCT CAAGTTCATTATACATCAGATTGGATACAATATTCCTCCCAAGAGAATTATTATCCGCCACCAGAAGCCTATTATCCACCGCCACCGCCGCCACCAGAAG CCTATTATCCACCACCACCACCACCAGAAGCCTATTATCCACCACCACCACCAGGACCACCACCACCGATGGTGGATGGGGCATGGGGATGTAACTGCCC GCCTCAGCCTCCACTGTTCCATACTTGGCCTCCTGGTGCTAATAGACAATTGCCGACATATGCTGACGAAGAGATGCGGGCAAATGATTTGAGATTGGGG AGAGTTCATCATTCATCGTTTTGGAATGGCAGGTCCTGGAAGATGTAG
AA sequence Show only first row Show all	>Potri.013G107175.1 pacid=42811559 polypeptide=Potri.013G107175.1.p locus=Potri.013G107175 ID=Potri.013G107175.1.v4.1 annot-version=v4.1 MDSGSMELKVMYCKDVNSFNFFKKLLVYVLVSIVRDDGGGDTDKKQLELQKQQQRTPTDTEGDGNPEWNHQMHFDLTEVSFQDCDHFFIHFDLCHEGLYF GDKTIGKVRVPLKDLIQEANGIVRFLSYEVRTPDGKPNGVLKFSCKVKNMGTNSSQAGITGYPIVNNQPYPTSEVQSLSEQAHYPTLDLEGNSQETDTVS QVHYTSDWIQYSSQENYYPPPEAYYPPPPPPPEAYYPPPPPPEAYYPPPPPGPPPPMVDGAWGCNCPPQPPLFHTWPPGANRQLPTYADEEMRANDLRLG RVHHSSFWNGRSWKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16510			Calcium-dependent lipid-bindin...		Potri.013G107175 [exp]	0	1
					Potri.002G008050 [exp]	17.43	0.7480
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.001G133000 [exp]	24.97	0.7094
AT2G36780			UDP-Glycosyltransferase superf...		Potri.003G100500 [exp]	30.19	0.7382
AT3G56110		PRA1.B1	prenylated RAB acceptor 1.B1 (...		Potri.008G074000 [exp]	37.22	0.7212
AT4G35510			unknown protein		Potri.007G063000 [exp]	45.37	0.6757
AT5G18200			UTP:galactose-1-phosphate urid...		Potri.006G233200 [exp]	58.30	0.6944
					Potri.013G070900 [exp]	69.35	0.6783
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.018G022700 [exp]	92.02	0.6641	Pt-KNAT3.3
AT5G43210			Excinuclease ABC, C subunit, N...		Potri.001G260300 [exp]	130.62	0.6737
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Potri.002G225800 [exp]	159.68	0.6632

Compare expression of checked genes

Potri.013G107175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.