Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22610 1414 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 1060 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 1044 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 1033 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G11610 993 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G06850 981 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 945 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 916 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 858 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 809 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G080000 [exp] 1714 / 0 AT1G22610 1442 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 1102 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.003G125900 [exp] 1087 / 0 AT4G11610 1543 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 1067 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 1066 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.014G081700 [exp] 1060 / 0 AT4G11610 1422 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.002G158000 [exp] 1059 / 0 AT4G11610 1400 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 1032 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 1024 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001538 [exp] 1313 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 1076 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 1064 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 1063 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 1004 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 984 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 979 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 804 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10033343 [exp] 723 / 0 AT5G12970 821 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10033097 [exp] 712 / 0 AT1G74720 1566 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0484 [poplar] [flax] Peroxisome PF08372 [poplar] [flax] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.013G107700.1 pacid=42811212 polypeptide=Potri.013G107700.1.p locus=Potri.013G107700 ID=Potri.013G107700.1.v4.1 annot-version=v4.1 ATGACCATACTAGTAGTGGAAGTTCACGATGCTTGTGACCTTATGCCCAAAGATGGCCATGGTTCAGCCAGTCCTTACGTAGAGGTAGACTTTGATGAGC AAAAACAGAGGACCCAAACCAAGCCTCAGGAGCTTAACCCTATTTGGAATGAAAAGCTTGTTTTCAGTGTAAGAAACCCAAGAGATCTTCCCAACAAGAC CATTGAAGTTGTTGTGTACAATGATCGAAAAGGCGGCCACAACAAGAACTTTCTTGGTTGTGTTAGGATCTCTGGAATCTCTGTGCCTTTATTATCTGAT TCCGAGGCCATTGATCCCCAGAGATACCCTCTTGATAAACGTGGCCCCTTTTCGCATGTCAAAGGTGATGTAGCACTCAAGATTTATGCAGCACATGATG GTAGCCACCCTCCTCCTCCTCCTCCTCCGACAAATGCTGGCAATATTGAGACTGAAGCAACTCCAGTATTTCAAGAAATCAAGACCACCATGCTTCAAGA AGATGTTATTGATGATCACGAGAAGAAAAAGAAGAAGAAGAAAAATAAGGATAAAGAAGTGAGGACTTTTCACACTATAGGGACTGCAACTGCTGCTCCC GCTGCTGCTCCGGCTCCTCCTGTGTCTACCGGGTTCGTATTTCAGCCTCAAGTTATGAAAGAAAAGGCTCCTACAGTTGAGACAAGGACTGATTTTGCTC GAGCAGGGCCACCTACTGCTATGAATATGCAGATGCCTAGGCAGAATCCTGAATTCTTGTTGGTAGAGACCAGTCCACCGGTGGCTGCACGTATGCGATA CAGAGGATGGGACAAGATGGCAAGTACTTATGATTTGGTGGAGCAGATGCATTACTTGTATGTGAGTGTGGTTAAGGCCAGAGATCTTCCTGTTATGGAT GTTTCTGGGAGTCTTGATCCATATGTTGAAGTTAAGCTGGGGAACTATAAAGGAAAGACTAAATACTTGGAGAAGAACCAAAGCCCGGTGTGGACGCAAA TATTTGCATTCGCAAAGGATAGATTGCAGTCCAATTTACTTGAAGTTACTGTGAAGGATAAGGATTTTGGCAAGGATGATTTTGTGGGCAGAGTTTTTTT TGATCTATCGGAAGTCCCTCTTCGAGTGCCACCGGATAGTCCTCTGGCTCCTCAGTGGTACATATTGGAGGACAAGAAGGGGGTCAAGACCAGAGGAGAG ATTATGCTTGCAGTTTGGATGGGAACACAGGCTGATGAGTCATTTCCTGAGGCATGGCATAGTGATGCTCATGACATTAGTCATACGAACCTTTCCAACA CACGATCGAAGGTCTACTTTTCGCCGAAGCTGTATTACCTTCGAGTTCATGTCATTGAAGCCCAAGATCTTGTCCCCTCCGATAGGGGCCGCATGCCAGA TGTGTATGTAAAAGTTCAACTTGGTAATCAGTTAAGGGTCACTAAGCCTTCGGAGATGCGAACCATTAATCCAATTTGGAATGATGAGCTTATATTTGTT GCGTCTGAGCCTTTTGAGGATTTCATAATTGTGTCTGTTGAGGACAGGATAGGACAAGGCAAGGTTGAGATACTGGGAAGGGTCATTTTATCAGTTAGGG ATGTACCAACAAGACTTGAGACGCATAAGCTCCCAGATCCTCGCTGGTTAAATCTCCTCAGGCCTTCGTTCATAGAAGAGGGTGACAAGAAGAAAGATAA ATTCTCAAGCAAGATCCTACTCTGTCTCTGTTTAGATGCAGGGTATCACGTCCTTGATGAGTCTACGCATTTTAGCAGTGATCTGCAGCCGTCATCCAAG CACCTGAGGAAGCAAAATATTGGAATCCTTGAACTTGGGATTCTCAGTGCACGAAATCTGCTGCCATTGAAGGGAAAGGATGGCAGGACTACTGATGCGT ATTGTGTGTCCAAGTATGGCAACAAATGGGTTCGAACCAGAACAATTCTCGATACTCTGAATCCTCGTTGGAATGAGCAGTATACTTGGGATGTTTATGA TCCTTGCACTGTGATCACCATTGGTGTCTTTGACAATTGCCACATTAATGGAAGCAAAGAAGATGCAAGAGATCAGAGAATTGGGAAGGTAAGGATTCGG CTATCAACTTTGGAAACTAATCGAATATATACACATTATTATCCATTGCTAGTTCTTACCCACTCTGGATTAAAGAAGCATGGGGAACTTCACTTGGCAT TAAGGTTTACATGCACAGCTTGGGTTAATATGTTGGCTCACTATGGCAAGCCATTGCTTCCCAAAATGCACTATTACCACCCAATTTCTGTTAGGCACAT TGACTGGCTCCGCCACCAGGCAATGCAGATAGTGGCAGCAAGGCTAGCAAGATCTGAGCCACCGCTTAGGCGTGAAGCTGTGGAGTACATGTTAGATGTG GATTACCATATGTGGAGTTTGAGGAGAAGCAAAGCTAATGTTCATCGCATGATGTCAATGCTTTCAGGGGTCACGGCTGTCTGTAAATGGTTTAATGACA TTTGCTACTGGAGAAATCCAATAACAACATGTCTAGTGCACGTGTTGTTCTTCATACTGGTTTGCTATCCAGAGTTGATACTGCCCACAATCTTTCTCTA TCTGTTTGTGATTGGGTTATGGAATTATCGGTTCAGGCCAAGGCACCCTCCTCACATGGATACTAGGCTTTCACAGGCAGACAACGCCCATCCAGATGAA CTTGATGAGGAATTTGATACATTCCCAGCATCCCGGCCATCGGACATTGTGAGGATGAGATATGACAGGATGAGAAGTGTTGCCGGTAGGGTGCAGACAG TGGTTGGAGATTTGGCAAGCCAAGGGGAAAGAGCTCAGGCACTACTAAGTTGGAGGGATCCAAGGGCTACGGCAATCTTTATCCTCTTTTCATTAATCGG GGCTGTACTTATTTATGTCACTCTATTCCAGGTAGTGGCAGTGCTGGTTGGACTCTACGTGCTTCGACATCCCAGGTTCAGGAGCCGGATGCCCTCTGTG CCTGTCAACTTCTTCAAGAGATTACCGTCCAGAGCAGATATGTTACTTTGA
AA sequence Show only first row Show all	>Potri.013G107700.1 pacid=42811212 polypeptide=Potri.013G107700.1.p locus=Potri.013G107700 ID=Potri.013G107700.1.v4.1 annot-version=v4.1 MTILVVEVHDACDLMPKDGHGSASPYVEVDFDEQKQRTQTKPQELNPIWNEKLVFSVRNPRDLPNKTIEVVVYNDRKGGHNKNFLGCVRISGISVPLLSD SEAIDPQRYPLDKRGPFSHVKGDVALKIYAAHDGSHPPPPPPPTNAGNIETEATPVFQEIKTTMLQEDVIDDHEKKKKKKKNKDKEVRTFHTIGTATAAP AAAPAPPVSTGFVFQPQVMKEKAPTVETRTDFARAGPPTAMNMQMPRQNPEFLLVETSPPVAARMRYRGWDKMASTYDLVEQMHYLYVSVVKARDLPVMD VSGSLDPYVEVKLGNYKGKTKYLEKNQSPVWTQIFAFAKDRLQSNLLEVTVKDKDFGKDDFVGRVFFDLSEVPLRVPPDSPLAPQWYILEDKKGVKTRGE IMLAVWMGTQADESFPEAWHSDAHDISHTNLSNTRSKVYFSPKLYYLRVHVIEAQDLVPSDRGRMPDVYVKVQLGNQLRVTKPSEMRTINPIWNDELIFV ASEPFEDFIIVSVEDRIGQGKVEILGRVILSVRDVPTRLETHKLPDPRWLNLLRPSFIEEGDKKKDKFSSKILLCLCLDAGYHVLDESTHFSSDLQPSSK HLRKQNIGILELGILSARNLLPLKGKDGRTTDAYCVSKYGNKWVRTRTILDTLNPRWNEQYTWDVYDPCTVITIGVFDNCHINGSKEDARDQRIGKVRIR LSTLETNRIYTHYYPLLVLTHSGLKKHGELHLALRFTCTAWVNMLAHYGKPLLPKMHYYHPISVRHIDWLRHQAMQIVAARLARSEPPLRREAVEYMLDV DYHMWSLRRSKANVHRMMSMLSGVTAVCKWFNDICYWRNPITTCLVHVLFFILVCYPELILPTIFLYLFVIGLWNYRFRPRHPPHMDTRLSQADNAHPDE LDEEFDTFPASRPSDIVRMRYDRMRSVAGRVQTVVGDLASQGERAQALLSWRDPRATAIFILFSLIGAVLIYVTLFQVVAVLVGLYVLRHPRFRSRMPSV PVNFFKRLPSRADMLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22610			C2 calcium/lipid-binding plant...		Potri.013G107700 [exp]	0	1
AT4G16380			Heavy metal transport/detoxifi...		Potri.016G006700 [exp]	1.41	0.7947
AT5G13660			unknown protein		Potri.010G209300 [exp]	2.44	0.7575
AT1G23050			hydroxyproline-rich glycoprote...		Potri.008G129200 [exp]	6.63	0.7053
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.006G108300 [exp]	6.70	0.7787
AT1G68670	GARP		myb-like transcription factor ...		Potri.008G117500 [exp]	7.07	0.7011
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Potri.018G107600 [exp]	8.48	0.7761
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.016G136500 [exp]	10.39	0.7817
AT5G43020			Leucine-rich repeat protein ki...		Potri.007G046900 [exp]	10.48	0.7588
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Potri.005G049800 [exp]	16.43	0.6864
AT3G08670			unknown protein		Potri.016G139500 [exp]	16.52	0.7571

Compare expression of checked genes

Potri.013G107700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.