Plant FIBer expression Database

Potri.013G107800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72090 847 / 0 Methylthiotransferase (.1)
AT4G36390 128 / 7e-31 Methylthiotransferase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G018500
[exp]
136 / 2e-33 AT4G36390 864 / 0.0 Methylthiotransferase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016926
[exp]
828 / 0 AT1G72090 787 / 0.0 Methylthiotransferase (.1)
Lus10008262
[exp]
697 / 0 AT1G72090 658 / 0.0 Methylthiotransferase (.1)
Lus10028344
[exp]
138 / 4e-34 AT4G36390 908 / 0.0 Methylthiotransferase (.1)
Lus10041793
[exp]
136 / 1e-33 AT4G36390 913 / 0.0 Methylthiotransferase (.1)
Lus10008261
[exp]
93 / 1e-22 AT1G72090 74 / 8e-17 Methylthiotransferase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0304 CheY PF00919 UPF0004 Uncharacterized protein family UPF0004
CL0036 TIM_barrel PF04055 Radical_SAM Radical SAM superfamily
Representative CDS sequence
>Potri.013G107800.1 pacid=42811250 polypeptide=Potri.013G107800.1.p locus=Potri.013G107800 ID=Potri.013G107800.1.v4.1 annot-version=v4.1
ATGGAAGACATTGAAGATTTGCTGGTTGGTAATGGAAGTGGGTCTCCTCCTGGATTCAGGTTGCCACTGAACGCAGTTGGAGTAAACCTCAAGAAGAACA
AGAATAAGCCGAAACTGCATGCCAAGCAACTTTCTGAAACCCCTATCTCTTCCAAGATTCCTGGCACTCAGACAATATATATCAAGACTTTTGGATGCTC
CCATAACCAGAGTGATAGTGAATATATGGCCGGACAACTTTCATCATTTGGTTATTCATTAAGTGATAGTCCTGAGGAGGCAGACCTGTGGCTGATCAAT
ACATGCACTGTAAAATCACCAAGTCAATCTGCCATGGACACTCTAATATCAAAGGGTAAAAGTGCAAAAAAACCACTTGTGGTGGCTGGGTGTGTGCCTC
AAGGAAGTCGGAACGTGAAAGAATTAGAAGGAGTCAGTATAGTTGGAGTCCAGCAAATAGATCGTGTAGTTGAAGTTGTAGAGGAGACTTTAAAAGGTCA
TGAAGTGCGGCTTTTGAACCGCAAGACATTGCCAGCACTTGACCTCCCCAAGGTGCGAAAGAACAAATTTGTTGAGATTCTTCCCATTAATGTTGGGTGT
TTGGGGGCCTGTACTTATTGCAAGACAAAGCATGCCCGTGGGCATTTAGGGAGCTACACTGTCGATAGCCTTGCAGGGCGTGTAAAAACAGTTATAGATG
ATGGAGTAAAGGAAATATGGTTGAGTAGTGAAGATACAGGAGCTTATGGTCGTGACATTGGGGTTAATCTTCCAATTTTATTGAATGCTATTGTTGCTGA
ACTTCCTTCTGATGGAAGCACAATGCTTCGAATTGGGATGACAAATCCACCTTTTATTCTGGAGCACCTGAAAGAGATAGCAGAAGTTCTGCGCCATCCA
TGTGTATACTCCTTTCTTCACGTGCCAGTGCAGTCTGGTAGTGATGCCATTTTGACTGCAATGAATCGAGAATACACTGTGAATGAATTCAGGACTGTGG
TTGATACCTTGACTGAGCTAGTTCCAGGGATGCAGATTGCTACCGATATAATATGTGGATTCCCTGGTGAAACAGATAAAGATTTTTCTCAAACAGTCAA
CCTTATTAAAGCGTACAAGTTTGCTCAAGTTCATATCTCGCAGTTCTATCCTAGACCAGGGACACCTGCTGCAAGGATGAAGAAGGTTCCAAGTAACATA
GTGAAGCAAAGAAGCCGTGAATTGACTTCTGTGTTTGAAGCTTTCACTCCTTACAATGGAATGGAGGGCAGAGTGGAAAGAATATGGATAACAGATATCG
CCGCTGATGGAATTCACTTGGTTGGCCACACAAAAGCATACGTGCAGGTGCTCATAGTTGCTCAAGAAAGCATGCTGGGTACTTCAGCTATTGTTAAGAT
AACCTCCGTTGGAAGGTGGTCAGTTTTTGGAGAAGTGATTGAGACTCTCAACCAAATAAATCAGAAATCCAAGTCCGTCGAGAAAATGCTCAGCGAGGAA
AAATGTTCTCCCTGTTCCGACCCATGTGACAGCTGTGCATGTTCCGGAGAGTCAGAACCTTGTGCTTGTGGACCAGAGAGCTGTGGAGGACAGAGTACTA
TAGAACAAAGTGATGTTTTGCAGAATGAAGTGCTTCGAGAAGATCAAAATAGAAGAAATCTCATTGGATGGTTACTAAGAAAGCGGAAAAATCAGGCACA
GAAAATGGTGGAGAATGGTATTGCGTCGGGATCCCAGAAAAAGCAAGAATGGGCCAAAGGAGCTCCGGAGGAGTGGGGTGTTGTGGATAGGGCACTCCTA
GGAGGATTAATTGTCAGCGTTTTTACTACTGTAGCTATACTAATACATCTTGGATTTAAGACCATGTCATCCAAGTGA
AA sequence
>Potri.013G107800.1 pacid=42811250 polypeptide=Potri.013G107800.1.p locus=Potri.013G107800 ID=Potri.013G107800.1.v4.1 annot-version=v4.1
MEDIEDLLVGNGSGSPPGFRLPLNAVGVNLKKNKNKPKLHAKQLSETPISSKIPGTQTIYIKTFGCSHNQSDSEYMAGQLSSFGYSLSDSPEEADLWLIN
TCTVKSPSQSAMDTLISKGKSAKKPLVVAGCVPQGSRNVKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLPALDLPKVRKNKFVEILPINVGC
LGACTYCKTKHARGHLGSYTVDSLAGRVKTVIDDGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVAELPSDGSTMLRIGMTNPPFILEHLKEIAEVLRHP
CVYSFLHVPVQSGSDAILTAMNREYTVNEFRTVVDTLTELVPGMQIATDIICGFPGETDKDFSQTVNLIKAYKFAQVHISQFYPRPGTPAARMKKVPSNI
VKQRSRELTSVFEAFTPYNGMEGRVERIWITDIAADGIHLVGHTKAYVQVLIVAQESMLGTSAIVKITSVGRWSVFGEVIETLNQINQKSKSVEKMLSEE
KCSPCSDPCDSCACSGESEPCACGPESCGGQSTIEQSDVLQNEVLREDQNRRNLIGWLLRKRKNQAQKMVENGIASGSQKKQEWAKGAPEEWGVVDRALL
GGLIVSVFTTVAILIHLGFKTMSSK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G72090 Methylthiotransferase (.1) Potri.013G107800
[exp]
0 1
AT5G63110 RPD3B, CAT1, AX... RNA-MEDIATED TRANSCRIPTIONAL S... Potri.015G082500
[exp]
2.00 0.7142
AT2G37690 phosphoribosylaminoimidazole c... Potri.019G012300
[exp]
7.00 0.7334 Pt-PURE.2
AT3G49990 unknown protein Potri.005G234800
[exp]
13.11 0.7298
AT5G66100 winged-helix DNA-binding trans... Potri.005G243600
[exp]
14.38 0.6731
AT4G18030 S-adenosyl-L-methionine-depend... Potri.001G146400
[exp]
20.44 0.6888
AT2G42710 Ribosomal protein L1p/L10e fam... Potri.014G143000
[exp]
23.17 0.7262
AT5G57120 unknown protein Potri.018G140200
[exp]
26.07 0.7062
AT3G10110 MEE67 maternal effect embryo arrest ... Potri.009G076400
[exp]
31.36 0.6991
AT1G26460 Tetratricopeptide repeat (TPR)... Potri.010G159100
[exp]
31.43 0.6758
AT5G07900 Mitochondrial transcription te... Potri.004G012400
[exp]
37.10 0.6657

Potri.013G107800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.