Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14870 951 / 0 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT4G30360 805 / 0 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT3G48010 804 / 0 ATCNGC16 cyclic nucleotide-gated channel 16 (.1) AT2G24610 795 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT2G28260 705 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT1G15990 644 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT2G23980 639 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT1G19780 638 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT4G30560 638 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT5G53130 637 / 0 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G067000 [exp] 855 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.018G097600 [exp] 843 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.018G009200 [exp] 766 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.009G010700 [exp] 696 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G106100 [exp] 657 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.015G019100 [exp] 630 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.003G183000 [exp] 626 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.012G002200 [exp] 624 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.001G043900 [exp] 619 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039415 [exp] 999 / 0 AT5G14870 980 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10039486 [exp] 994 / 0 AT5G14870 985 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10015510 [exp] 820 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10002363 [exp] 816 / 0 AT3G48010 919 / 0.0 cyclic nucleotide-gated channel 16 (.1) Lus10019983 [exp] 811 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10023203 [exp] 797 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10042132 [exp] 792 / 0 AT3G48010 902 / 0.0 cyclic nucleotide-gated channel 16 (.1) Lus10042434 [exp] 777 / 0 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026233 [exp] 759 / 0 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10020122 [exp] 734 / 0 AT2G24610 879 / 0.0 cyclic nucleotide-gated channel 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Potri.013G108200.2 pacid=42812602 polypeptide=Potri.013G108200.2.p locus=Potri.013G108200 ID=Potri.013G108200.2.v4.1 annot-version=v4.1 ATGAATAGACTTATTCACACCCCAACAGCAAAGTTCCGCCGCTTCAGGCGCCACCACCAACATGCCACCAGCACAACAGATCCTAACCCTCTCCAAATCC TATGGCGGTACCAGATACTGGATCCGGACAGCGAGATTGTAATGTATTGGAACCATGTCTTCCTTCTCACTTCCATCATTGCACTCTTCATCGACCCTCT CTACTTTTACCTCCCTTATGTTGGTCCTCAGAACCGAGACCGAATGACTATCCATTCAGACTATATTTATGTTTGCTTATCCATCGACAAACAACTTTCT GTGTTGATCACGTATTTTAGGTCCATAGCAGACATGTTTTTCTCCCTTCATATTCTTATGAAGTTTCGTACAGCTTTTGTTGCTCCTAGTTCTAGAGTTT TTGGACGGGGCGAACTTGTTATTGATGCTAAGGAGATTGCAATGCGTTATCTCAAGTCTGATTTCCTCATCGATCTGGCTGCTGCGCTTCCGCTTCCTCA GATTGTCATCTGGTTAGTAATTCCGGCCACAAGAAACAACAGCACTGACCATGCCAACACCACGCTCTCGCTAATGGTTCTTATTCAATACATTCCCAGA ATGTTTCTTATCTTTCCTTTGCATCAAAGGATCGTAAGATCTACAGGTTTTGTTGCCAAGGCTGCCTGGGCTGGAGCTGGATACAATCTAATTCTTTACA TGCTGGCCAGCCATGCATTAGGTGCTTCTTGGTATACATTGTCAATGGGGAGGCAATTCTATTGCTGGAAATCAGAATGTACGAAAGAGAACAAGGCAGG AATTGTAGGCTGCATCCATAGCTATCTAGACTGTAATAGTTTGGGAAATCCTGAACGCCAATATTGGAGGAATGTTACCGATGTTCCTGCTAATTGTGAT GCACGTAACGACACTCTCACGTTTAAGTATGGAATATTTGCTGATGCTTTTATCAATGATGTTGCTTCCTCACGTTTCATTGAGAAGTTCTTGTACTGTC TCTGGTGGGGCTTAAGAAATCTGAGCTCATATGGTCAGACCTTGGAAACGAGCACATTTCTGGGTGAGAATGTGTTCTGTATTCTCATATGCATTATTGG TTTAGTTCTCTCGGCACAGTTAATTGGCAACATGCAGACCAACTTGCAATCTATGACGGTGAGAGTTGAAGAGTGGAGGATTAAGCGGAGGGATACAGAA GAGTGGATGAGGCATCGCCAGTTACCTCCAGATTTGCAAGAACGTGTTCGCCGATTTGTTCAGCACAAATGGCTTGCTACTAGAGGAGTTCATGAAGAAT CGATACTGCATTCATTGCCTTTGGACCTCCGACGAGAAATTCAGCGACACTTATCTCTGGCCCTTGTTCGTCGCGTCCCATTCTTCTCACAAATGGACGA CCAGCTACTCGATGCCATATGTGAACGCCTGGTGTCATCATTGAGTACCGAGGGAACTTACATAGTTCGAGAGGGTGATCCAGTAAATGAGATGTTGTTT GTCATTAGAGGACAATTAGAGAGCTCAACCACTAATGGAGGAAGGTCTGGATTCTTCAATTCCATCACCCTTAGACCCGGTGACTTCTGTGGTGAGGAAT TACTCACTTGGGCCTTAATGCCAATATCAAGTGCAAACCTGCCTTCTTCAACACGAACTGTGAAAGCCCTTTCTGAAGTTGAAGCTTTTGCACTTGAAGC TAAAGACCTTAAATTTTTTGCACATCAATTCAAGCGACTGCAAAGCAAGAAGTTGCAGCATGCTTTTAGGTACTATTCTCACCAATGGAGAACATGGGCT GCTTGTTTAATACAATCTGTTTGGAGAAGGTATAAAAAGAGAAAGATGACAAAGGAGTTAGCTTTGCGAAATAGCATTGGGTACATTCAAATTCCTGAGC GAGAATATTACTATAGTGATGATCAAGCAGATGGAGATTACGAGGAGTAG
AA sequence Show only first row Show all	>Potri.013G108200.2 pacid=42812602 polypeptide=Potri.013G108200.2.p locus=Potri.013G108200 ID=Potri.013G108200.2.v4.1 annot-version=v4.1 MNRLIHTPTAKFRRFRRHHQHATSTTDPNPLQILWRYQILDPDSEIVMYWNHVFLLTSIIALFIDPLYFYLPYVGPQNRDRMTIHSDYIYVCLSIDKQLS VLITYFRSIADMFFSLHILMKFRTAFVAPSSRVFGRGELVIDAKEIAMRYLKSDFLIDLAAALPLPQIVIWLVIPATRNNSTDHANTTLSLMVLIQYIPR MFLIFPLHQRIVRSTGFVAKAAWAGAGYNLILYMLASHALGASWYTLSMGRQFYCWKSECTKENKAGIVGCIHSYLDCNSLGNPERQYWRNVTDVPANCD ARNDTLTFKYGIFADAFINDVASSRFIEKFLYCLWWGLRNLSSYGQTLETSTFLGENVFCILICIIGLVLSAQLIGNMQTNLQSMTVRVEEWRIKRRDTE EWMRHRQLPPDLQERVRRFVQHKWLATRGVHEESILHSLPLDLRREIQRHLSLALVRRVPFFSQMDDQLLDAICERLVSSLSTEGTYIVREGDPVNEMLF VIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALMPISSANLPSSTRTVKALSEVEAFALEAKDLKFFAHQFKRLQSKKLQHAFRYYSHQWRTWA ACLIQSVWRRYKKRKMTKELALRNSIGYIQIPEREYYYSDDQADGDYEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Potri.013G108200 [exp]	0	1
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Potri.017G028301 [exp]	5.83	0.9410
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Potri.010G002400 [exp]	8.94	0.9356
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Potri.001G301100 [exp]	9.21	0.9478	SEP1.1
AT2G31380	CO	STH	salt tolerance homologue (.1)		Potri.017G028300 [exp]	12.00	0.9389	Pt-STH.1
AT3G05410			Photosystem II reaction center...		Potri.005G027100 [exp]	20.61	0.9409
AT5G54600			Translation protein SH3-like f...		Potri.001G415400 [exp]	23.74	0.9410
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Potri.008G186601 [exp]	23.87	0.9399
AT3G56910		PSRP5	plastid-specific 50S ribosomal...		Potri.016G027600 [exp]	24.14	0.9354
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Potri.001G151300 [exp]	25.53	0.9409	Lil3_3,Pt-LIL3.1
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.011G124500 [exp]	30.29	0.9115

Compare expression of checked genes

Potri.013G108200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.