Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35470 608 / 0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) AT4G09340 549 / 0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09310 288 / 4e-93 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09200 288 / 4e-93 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09250 245 / 3e-77 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT1G06060 79 / 1e-16 LisH and RanBPM domains containing protein (.1) AT1G61150 68 / 7e-13 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) AT4G09300 47 / 1e-05 LisH and RanBPM domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G080800 [exp] 774 / 0 AT1G35470 610 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.011G046200 [exp] 73 / 2e-14 AT1G61150 383 / 3e-136 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Potri.004G037600 [exp] 67 / 2e-12 AT1G61150 384 / 3e-137 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Potri.002G029700 [exp] 66 / 3e-12 AT1G06060 283 / 1e-97 LisH and RanBPM domains containing protein (.1) Potri.005G233000 [exp] 62 / 8e-11 AT1G06060 201 / 3e-65 LisH and RanBPM domains containing protein (.1) Potri.005G083800 [exp] 49 / 1e-05 AT2G22010 1726 / 0.0 related to KPC1 (.1.2) Potri.007G081900 [exp] 47 / 2e-05 AT2G22010 1712 / 0.0 related to KPC1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009451 [exp] 631 / 0 AT1G35470 601 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10001544 [exp] 630 / 0 AT1G35470 604 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10008254 [exp] 321 / 2e-106 AT1G35470 309 / 3e-102 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009316 [exp] 185 / 6e-54 AT1G35470 197 / 7e-59 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009445 [exp] 175 / 8e-51 AT1G35470 188 / 4e-56 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10020190 [exp] 164 / 1e-46 AT1G35470 167 / 1e-48 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10006084 [exp] 104 / 6e-24 AT1G35470 101 / 7e-23 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10020191 [exp] 77 / 6e-16 AT1G35470 69 / 2e-13 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10002729 [exp] 70 / 3e-14 AT1G35470 81 / 8e-19 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10005633 [exp] 72 / 4e-14 AT1G06060 275 / 2e-94 LisH and RanBPM domains containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00622 [poplar] [flax] SPRY SPRY domain CL0004 [poplar] [flax] PF10607 [poplar] [flax] CLTH CTLH/CRA C-terminal to LisH motif domain
Representative CDS sequence Show only first row Show all	>Potri.013G108400.2 pacid=42812398 polypeptide=Potri.013G108400.2.p locus=Potri.013G108400 ID=Potri.013G108400.2.v4.1 annot-version=v4.1 ATGACCACCACCAGCACTACCGCGGCAACCACCAACAACACCGCCATCAACTCGAGTTCCAAGAACGTAAATCAAGATCCAGGCTCATACTTCATAGACG TAGCACGGCAGTACTCATCACCAGTTGGCGGAGAAACAGAGCTTGAACCGACGGAGTTAAACACAGTGAAAGGTTCTGGAGGGTTTCTTGTGGTTTCCAT TGATAAATTGAGTGTTAAATACACAAGTGTCAATCTTCATGGTCATGATGTTGGTGTTATTCAAGCCGATAGACCGGCTCCGGAAAAACGGCTTGTTTAT TATTTTGAGATTTATGTAAAGAATGCTGGTGATAAAGGACAGATTGCTATTGGTTTTAGTAATCATACTTTCAAGATGAGGAGACAGCCTGGGTGGGAAG CAAACAGTTATGGATATCATGGGGATGATGGCAATCTTTATCGTGGACCTGGAACAGGGGAGGCATTTGGACCAACTTTCACGACCAATGATACAGTTGG TGCTGGTATCAACTATACTTCACAGGAATTCTTTTTCACTAAAAATGGAGCATTAGTTAGGGCAGTGTATAAGGACATGAAGGGTTTGCTGTTTCCGACT GTTGCTGTTCACAGCCAAAATGAGGAGATTGAAGTCAACTTTGGGAAGAAACCATTTGCTTTTGATCTTAAGGAATATGAAAGACAAGAAACGATGAAGC AACAAATGAAAGTTGACAAAATATCTTTACCGCCAATTGTTAGTTATGGACTTGTTCGCTCGTACTTATTACACAATGGCTATGAAGAGACACTCAATGC ATTTGATGTGGCTAGTAGAAGTACTATCCCTCCTATATATATAGCTCAGGAAAATGGCTCTGGTGAACAGGACATTGCATATGCATTAGCACAGAGGAAA GCTCTTCGACAGCTAATCAGAAATGGTGAGATTGATTCTGCACTCAGTAAACTTCGTGAGTGGTATCCCCAGATTGTTCAGGATGAAAAATCAGCCACCT GCTTTCTGCTTCACAGTCAAAAGTTTATTGAACTAGTTCGGGCTGGAGCACTAGAGGAGGCTGTCCATTATGGAAGGATTGAATTGGCAAAGTTCTTTAA GCTGCCTGGGTTTGATGATCTAGTTCAGGATTGTGTTGCCTTGCTGGCGTATGAAAAACCACATCAGAGCTCAGCTGGGTATCTTCTTGAGGAGTCACAG CGTGAGATTGTGGCTGATGCTGTAAATGCCATGATTTTGTTAACAGGTCCCAACGTGAAGGATGCACAAAGCTGCTTGCGACCTCATCTTGAGAGGTTAC TCAGACAGCTTACTGTTTGCTGCCTGGAGAGAAGGTCCTTGAATGGGGGTCAAGGTGAAGCTTTCCACCTGCATGGAGCACTAAAACTTAACAGCGGGAA GAGGGCCAAGTGCTCACATTTATAA
AA sequence Show only first row Show all	>Potri.013G108400.2 pacid=42812398 polypeptide=Potri.013G108400.2.p locus=Potri.013G108400 ID=Potri.013G108400.2.v4.1 annot-version=v4.1 MTTTSTTAATTNNTAINSSSKNVNQDPGSYFIDVARQYSSPVGGETELEPTELNTVKGSGGFLVVSIDKLSVKYTSVNLHGHDVGVIQADRPAPEKRLVY YFEIYVKNAGDKGQIAIGFSNHTFKMRRQPGWEANSYGYHGDDGNLYRGPGTGEAFGPTFTTNDTVGAGINYTSQEFFFTKNGALVRAVYKDMKGLLFPT VAVHSQNEEIEVNFGKKPFAFDLKEYERQETMKQQMKVDKISLPPIVSYGLVRSYLLHNGYEETLNAFDVASRSTIPPIYIAQENGSGEQDIAYALAQRK ALRQLIRNGEIDSALSKLREWYPQIVQDEKSATCFLLHSQKFIELVRAGALEEAVHYGRIELAKFFKLPGFDDLVQDCVALLAYEKPHQSSAGYLLEESQ REIVADAVNAMILLTGPNVKDAQSCLRPHLERLLRQLTVCCLERRSLNGGQGEAFHLHGALKLNSGKRAKCSHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G35470			SPla/RYanodine receptor (SPRY)...		Potri.013G108400 [exp]	0	1
AT1G13570			F-box/RNI-like superfamily pro...		Potri.010G134200 [exp]	7.34	0.8291
AT3G26370			O-fucosyltransferase family pr...		Potri.010G048500 [exp]	7.74	0.7724
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Potri.011G004700 [exp]	9.00	0.7786
AT3G27960			Tetratricopeptide repeat (TPR)...		Potri.008G094700 [exp]	14.28	0.8450
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Potri.010G148500 [exp]	15.39	0.8118
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Potri.003G091500 [exp]	28.63	0.7653	Pt-BOU.2
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Potri.012G016200 [exp]	32.24	0.8064
AT5G03300		ADK2	adenosine kinase 2 (.1)		Potri.008G038100 [exp]	33.57	0.8034
AT1G04650			unknown protein		Potri.001G053000 [exp]	38.97	0.7722
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.006G181900 [exp]	40.29	0.8023	Pt-CESA2.1

Compare expression of checked genes

Potri.013G108400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.