Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72050 410 / 2e-142 C2H2ZnF TFIIIA transcription factor IIIA (.1.2) AT4G06634 65 / 2e-11 C2H2ZnF zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) AT5G04240 56 / 5e-08 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) AT3G48430 52 / 7e-07 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G081100 [exp] 649 / 0 AT1G72050 413 / 2e-143 transcription factor IIIA (.1.2) Potri.004G221700 [exp] 67 / 3e-12 AT4G06634 432 / 4e-151 zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) Potri.003G010400 [exp] 61 / 3e-10 AT4G06634 408 / 7e-142 zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) Potri.010G224700 [exp] 51 / 9e-07 AT5G04240 956 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Potri.008G037800 [exp] 51 / 1e-06 AT5G04240 997 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Potri.015G089000 [exp] 50 / 3e-06 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.012G092400 [exp] 49 / 3e-06 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015657 [exp] 455 / 1e-160 AT1G72050 394 / 9e-136 transcription factor IIIA (.1.2) Lus10037673 [exp] 424 / 5e-149 AT1G72050 356 / 1e-121 transcription factor IIIA (.1.2) Lus10011009 [exp] 59 / 3e-09 AT4G06634 378 / 7e-130 zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) Lus10000585 [exp] 52 / 4e-07 AT4G06634 319 / 3e-107 zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) Lus10043332 [exp] 50 / 2e-06 AT3G48430 877 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10019482 [exp] 50 / 3e-06 AT3G48430 984 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10037989 [exp] 45 / 8e-05 AT5G04240 988 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G108600.1 pacid=42811063 polypeptide=Potri.013G108600.1.p locus=Potri.013G108600 ID=Potri.013G108600.1.v4.1 annot-version=v4.1 ATGGCGATGATAGAAGAAGAACAAGTGGAGAAAGAAAGGCCAGTTATATTCAGAGATATAAGGCGTTATTATTGTGATTATTGTGGTATTTGCAGATCTA AGAAGTCTCTTATCACTTCTCACGTCCTCACTCATCACAAGGAGGAGATGGACGAGGAAAGTGTTGATGGGGATGAGGGAAAGGAGGGAGTCAAATCCAA CACATGTGAAAATTGCGGTGCTAGTTTTAAAAAGCCTGCGTATTTGATTCAACACATGCAAAGTCATTCTCTTGAGAGGCCATTTAAGTGCTTGTTTGAT GATTGCCATGCCAGCTATAGAAGGAAAGATCACTTAACTCGCCACCTTCTCCAGCATGAAGGGAAACTTTTCAAGTGTCAAATTGAGAATTGCAATCGTG AATTTGTTTACCCAAGCAACTTGAAAAGGCATGTTAGAGAACTTCATGATGAGAGTTTTCCCTCCTGTAGTTTTGGAGGTGAGAAGCAGTATGTTTGCCA GGAGCCGGGATGTGGGAAGGCATTCAGATACCCATCAAAGCTGCGAAAGCACGAGGATTCTCATGTGAGCCTGGACCACGTGGAGGCAATGTGTTTAGAA CCAGGCTGTATGAAACATTTTTCAAATAAGGAATGCCTGAAGGCCCACATTCAGTCCAGCCACCAATACATTAACTGTGATATCTGTGGCACAAAACAGC TGAAAAAGAACATCAAGAGGCATCTCCGCACCCATGAACCTGCCAGTGATTCAACAGAGAGAATCAAATGCCATTTCAATGGTTGTCAGCACACATTCTC TACTAAAACAAATCTTAATCAGCATGTGAAGGCAGTGCACCTTGAACACAGGCCTTTTTTGTGTGGATTTCCAGGTTGTGACATGAGATTCTCATACAAG CATGTGAGAGATAACCATGAAAAGTCTGGTTTGCATGTCTATACTCCTGGTGATTTTGTGGAGTCTGATCGGCAGTTCAGGTCAAAGCCAAGAGGTGGGA GGAAGAGGAAATTCCCAACCGTTGAAATGTTGATACGCAAGAGAGTAACTCCACCAACTAAATTGGATGAGTGCCACCCGTGGTTGCATGAAATTGAGAG AGAGGACCAGTAG
AA sequence Show only first row Show all	>Potri.013G108600.1 pacid=42811063 polypeptide=Potri.013G108600.1.p locus=Potri.013G108600 ID=Potri.013G108600.1.v4.1 annot-version=v4.1 MAMIEEEQVEKERPVIFRDIRRYYCDYCGICRSKKSLITSHVLTHHKEEMDEESVDGDEGKEGVKSNTCENCGASFKKPAYLIQHMQSHSLERPFKCLFD DCHASYRRKDHLTRHLLQHEGKLFKCQIENCNREFVYPSNLKRHVRELHDESFPSCSFGGEKQYVCQEPGCGKAFRYPSKLRKHEDSHVSLDHVEAMCLE PGCMKHFSNKECLKAHIQSSHQYINCDICGTKQLKKNIKRHLRTHEPASDSTERIKCHFNGCQHTFSTKTNLNQHVKAVHLEHRPFLCGFPGCDMRFSYK HVRDNHEKSGLHVYTPGDFVESDRQFRSKPRGGRKRKFPTVEMLIRKRVTPPTKLDECHPWLHEIEREDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Potri.013G108600 [exp]	0	1
AT1G05030			Major facilitator superfamily ...		Potri.014G060800 [exp]	2.00	0.8798
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Potri.005G232200 [exp]	5.29	0.8602
AT1G56190			Phosphoglycerate kinase family...		Potri.016G091800 [exp]	6.16	0.8111
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.005G183800 [exp]	7.21	0.8248
AT5G46190			RNA-binding KH domain-containi...		Potri.011G082500 [exp]	11.40	0.8601
AT5G17370			Transducin/WD40 repeat-like su...		Potri.003G155900 [exp]	13.85	0.8390
AT1G53163			unknown protein		Potri.001G398000 [exp]	15.90	0.8260
AT3G56680			Single-stranded nucleic acid b...		Potri.010G237500 [exp]	17.14	0.8498
AT1G14205			Ribosomal L18p/L5e family prot...		Potri.008G087100 [exp]	18.16	0.8136
AT4G26680			Tetratricopeptide repeat (TPR)...		Potri.014G166001 [exp]	19.51	0.7512

Compare expression of checked genes

Potri.013G108600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.