Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09350 309 / 5e-107 NdhT, CRRJ NADH dehydrogenase-like complex T, CHLORORESPIRATORY REDUCTION J, Chaperone DnaJ-domain superfamily protein (.1) AT1G80030 68 / 7e-13 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT2G22360 67 / 2e-12 DNAJ heat shock family protein (.1) AT4G39960 63 / 3e-11 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G17830 62 / 6e-11 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G28210 61 / 2e-10 ATJ1 DNAJ heat shock family protein (.1.2) AT3G13310 57 / 4e-10 Chaperone DnaJ-domain superfamily protein (.1) AT3G08970 58 / 1e-09 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT1G56300 56 / 1e-09 Chaperone DnaJ-domain superfamily protein (.1) AT1G71000 56 / 2e-09 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G094900 [exp] 68 / 5e-13 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 68 / 7e-13 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 67 / 1e-12 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.005G113100 [exp] 59 / 5e-11 AT2G17880 139 / 6e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020800 [exp] 59 / 9e-11 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G113400 [exp] 60 / 1e-10 AT1G71000 148 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G160200 [exp] 61 / 2e-10 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.001G072700 [exp] 60 / 2e-10 AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.015G035300 [exp] 60 / 3e-10 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042771 [exp] 305 / 5e-105 AT4G09350 288 / 8e-99 NADH dehydrogenase-like complex T, CHLORORESPIRATORY REDUCTION J, Chaperone DnaJ-domain superfamily protein (.1) Lus10029740 [exp] 299 / 9e-103 AT4G09350 287 / 2e-98 NADH dehydrogenase-like complex T, CHLORORESPIRATORY REDUCTION J, Chaperone DnaJ-domain superfamily protein (.1) Lus10000631 [exp] 65 / 6e-12 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023148 [exp] 65 / 1e-11 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10011484 [exp] 65 / 1e-11 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10023122 [exp] 64 / 2e-11 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10031908 [exp] 62 / 8e-11 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10017263 [exp] 59 / 1e-10 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10031336 [exp] 60 / 4e-10 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10040777 [exp] 59 / 4e-10 AT5G59610 246 / 6e-81 Chaperone DnaJ-domain superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.013G109000.1 pacid=42811812 polypeptide=Potri.013G109000.1.p locus=Potri.013G109000 ID=Potri.013G109000.1.v4.1 annot-version=v4.1 ATGGCTTCCACAACTGCCACTCAAGCTCCGTTTTCTCTCTTTCTTAGGACCCAAAACGGCAGTGGCCACCGTAGGAAAAAACATCTGTCGATAAGAAAAG CCCCATCAGGAAGAACAGGCAACAGAGGGAGAGCTTTTGGTGTTTATGCAGAACAAGGAAGCCCAGAGAAGCCTCAAAGAGCACCACCAGGGGTTGATAC AAGAATTCATTGGGACAACGAAGATGAAGGGTGGGTTGGAGGAAGTAGTACTAGTTCAGAGCAGACAAAGCAAGCAGAAGATGAGCAGAAAGATATGTTG GGAAAGAGGTTTGCTGATTTGCTCAATGATTCTTCTGATTCTCATTACCAGTTCTTAGGCGTATCAGCAGATGCTGATATGGAGGAGATTAAAACCGCAT ACAGGAGGCTATCAAAGGAGTACCATCCAGACACAACTTCACTTCCACTGAAATCAGCTTCAGAAAAGTTCATGAGACTAAGAGAAGTTTATGATATCTT GAGCAATGATGAGAAACGCAAATTTTATGATTGGACACTAGCTCAAGAGGCTGCAAGCCGGCAAGCAGAGCAAATGAGAATGAGATTGGAAGATCCTTAT GAACAAGAAATAAACAGATATGAATCTGTACCGGACATGGTTGATCGTCTTGGTGGAAGAAACATGGGTCTAAGTGATCAAGCAATGTCAGCTCTTACGT TTGATATTTTTATCATACTCTTCTCAATTGGTTGCCTCATTTTTGTTCTCTTCTTCAAAGAACCATATTAG
AA sequence Show only first row Show all	>Potri.013G109000.1 pacid=42811812 polypeptide=Potri.013G109000.1.p locus=Potri.013G109000 ID=Potri.013G109000.1.v4.1 annot-version=v4.1 MASTTATQAPFSLFLRTQNGSGHRRKKHLSIRKAPSGRTGNRGRAFGVYAEQGSPEKPQRAPPGVDTRIHWDNEDEGWVGGSSTSSEQTKQAEDEQKDML GKRFADLLNDSSDSHYQFLGVSADADMEEIKTAYRRLSKEYHPDTTSLPLKSASEKFMRLREVYDILSNDEKRKFYDWTLAQEAASRQAEQMRMRLEDPY EQEINRYESVPDMVDRLGGRNMGLSDQAMSALTFDIFIILFSIGCLIFVLFFKEPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Potri.013G109000 [exp]	0	1
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007700 [exp]	2.00	0.9746
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Potri.018G015700 [exp]	2.00	0.9777
AT2G21320	CO		B-box zinc finger family prote...		Potri.005G117100 [exp]	2.82	0.9709
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Potri.009G077900 [exp]	4.47	0.9704
AT5G49730		ATFRO6, FRO6	ferric reduction oxidase 6 (.1...		Potri.001G079000 [exp]	5.65	0.9665
AT2G32480		ARASP	ARABIDOPSIS SERIN PROTEASE (.1...		Potri.014G154000 [exp]	5.74	0.9721
AT1G75100		JAC1	J-domain protein required for ...		Potri.002G134300 [exp]	6.24	0.9542
AT2G04039			unknown protein		Potri.014G172800 [exp]	6.92	0.9702
AT2G05620		PGR5	proton gradient regulation 5 (...		Potri.008G171000 [exp]	7.41	0.9593	PGR5.2
AT3G56140			Protein of unknown function (D...		Potri.008G074300 [exp]	8.30	0.9480

Compare expression of checked genes

Potri.013G109000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.