Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14060 99 / 6e-27 GCK domain-containing protein (.1) AT5G02210 65 / 1e-13 GCK domain-containing protein (.1) AT5G57570 57 / 5e-11 GCK domain-containing protein (.1) AT5G57640 57 / 1e-10 GCK domain-containing protein (.1) AT1G23201 45 / 4e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G081400 [exp] 186 / 3e-61 AT1G14060 99 / 8e-27 GCK domain-containing protein (.1) Potri.013G099100 [exp] 109 / 5e-31 AT1G14060 92 / 2e-23 GCK domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026621 [exp] 97 / 8e-26 AT1G14060 95 / 1e-24 GCK domain-containing protein (.1) Lus10030441 [exp] 94 / 2e-24 AT1G14060 97 / 3e-25 GCK domain-containing protein (.1) Lus10037148 [exp] 75 / 1e-17 AT1G14060 79 / 4e-19 GCK domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07802 [poplar] [flax] GCK GCK domain
Representative CDS sequence Show only first row Show all	>Potri.013G109100.1 pacid=42812389 polypeptide=Potri.013G109100.1.p locus=Potri.013G109100 ID=Potri.013G109100.1.v4.1 annot-version=v4.1 ATGCCCTCTTCAGATCCTAAAACCCCGGAAGAAGCAAAACCCTCCTTTGATGATCCAGCATCAAAAGAATCCATAGAGTCATTGAATTCAACCAAAACCC TTGAAGAAACAGACCAAACGAATACACCCATGACTGGAAATGAAGAGGAAGAAGAGGAAGGGGAGTGTGGGTTTTGTTTGTTCATGAAAGGAGGTGGTTG CAAGGATGCATTTGTAGCATGGGAAGACTGTATTAAACAAGTGGAGGAAAAGAATGAAGATATTGTGGAGAAGTGCTTTGAAATTACTAGTGCGTTGAAG TTGTGTATGGAGGCTCATGCTGATTATTATGAGCCTATTTTGAGGGCTGAGAAGGCTGCTGAACAAGAGGCTGTTAAGCAATTGGAGAAGGAAAAGGAGG AGGAAGCCGCTGCTGCAGCGCAAAAATCTGAGTTTAACGAGAAAGAAAAGTGA
AA sequence Show only first row Show all	>Potri.013G109100.1 pacid=42812389 polypeptide=Potri.013G109100.1.p locus=Potri.013G109100 ID=Potri.013G109100.1.v4.1 annot-version=v4.1 MPSSDPKTPEEAKPSFDDPASKESIESLNSTKTLEETDQTNTPMTGNEEEEEEGECGFCLFMKGGGCKDAFVAWEDCIKQVEEKNEDIVEKCFEITSALK LCMEAHADYYEPILRAEKAAEQEAVKQLEKEKEEEAAAAAQKSEFNEKEK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14060			GCK domain-containing protein ...		Potri.013G109100 [exp]	0	1
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Potri.004G018000 [exp]	2.00	0.8552
AT1G12830			unknown protein		Potri.017G061400 [exp]	2.82	0.8199
AT1G14060			GCK domain-containing protein ...		Potri.019G081400 [exp]	5.19	0.8223
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.006G039600 [exp]	6.48	0.8272
AT3G51790		ATG1	transmembrane protein G1P-rela...		Potri.003G205200 [exp]	7.41	0.7622
AT3G13940			DNA binding;DNA-directed RNA p...		Potri.001G198600 [exp]	11.18	0.7908
AT4G02930			GTP binding Elongation factor ...		Potri.002G215900 [exp]	16.79	0.7880	Pt-TUFA.3
AT5G60960		PNM1	PPR protein localized to the n...		Potri.017G133400 [exp]	17.88	0.7440
AT3G11450			DnaJ domain ;Myb-like DNA-bind...		Potri.003G190000 [exp]	19.33	0.7152
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.007G107900 [exp]	20.59	0.7697

Compare expression of checked genes

Potri.013G109100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.