Plant FIBer expression Database

Potri.013G109400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72040 639 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G081600
[exp]
947 / 0 AT1G72040 630 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016950
[exp]
706 / 0 AT1G72040 606 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Lus10008257
[exp]
701 / 0 AT1G72040 605 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF01712 dNK Deoxynucleoside kinase
Representative CDS sequence
>Potri.013G109400.1 pacid=42811390 polypeptide=Potri.013G109400.1.p locus=Potri.013G109400 ID=Potri.013G109400.1.v4.1 annot-version=v4.1
ATGCAGAAGTTGCTACAAAGATACCCTTCAAGCCCCCCCCTCCTCTGCACTCCTGTTTCTACTAGTTTTTTTCTCTTCAAAAACAAACCCTACCCTTCTT
TTTCAATGCCAACTGCTACTAATTTCTGCACCAGTACTTCCTTTTTAGCTGCCTTTGTAGCCAAGAAACTCACTATCACACCCACACTGACCTCTCGCTT
CTATTCGACTACCTACTGTACTTGTCGTAGCGCTGTTGGGTATAAAACAACTAACCCATTAAGGGCATGGGTGGTGGCACGGCCGGCGTGGCATTGCACG
GTGGCTAGTGGGCAGGAAGGGCCTTTTGGGACCGCTGCGGCGGCGGCGGATGCTGAAGGTGTGAGGAGTAGTGGTGATGGAGAAGAGGAAGGAAAAGGTG
AAAAGAGTGAAAAGGGGGCGGAAGAAAAGACGGCGAGGTTGAGTAGGAGGCAGAAGAGGACGGGTGGTGATATGGAGGGGAATGCTGATTTGCTGACAAT
TCCTGGTGTAGGGCCAAAGAATTTGAGAAAATTGGTGGAGAAAGGGTTTACAGGAATGGCTGAGCTTAAGCAGTTTTATAAGGATAAGTTTCTTGGAAAA
TCCAGTGAGACAATGGTTGAGTATTTACAGAGTTCTGTGGGAATTATTCACAAAAATCATGCTGAGAGCATAACTTCTTTCATCCAAGAGAGTGTGGATG
AAGAGTTAAAGGTTTTAAATCCAGATGCAAGGCCCAAACCTAAGAAGCGACTCACATTTTGTGTCGAGGGAAATATCAGTGTTGGAAAGACAACATTTCT
TAAGAGAATAGTTAGTGATACAATTGAGCTGCGAGATCTTGTTGAGGTGGTGCCTGAACCCATTGATAAGTGGCAGGATGTTGGGCCTGACCACTTTAAT
ATACTTGATGCTTTCTATGCTGACCCATCAAGGTATGCTTATACCTTCCAGAATTATGTTTTTGTCACAAGGGTTATGCAGGAAAGAGAATCATCTGATG
GGTTGAAGCCACTCAGGTTGATGGAAAGAAGTGTTTTCAGTGACAGAATGGTCTTTGTACGAGCTGTGCATGAGGCAAAGTGGATGAATGAAATGGAGAT
CAGCATTTACGACTCATGGTTTGATCCAGTTGTCTCAGTTTTGCCGGGGCTTATTCCTGATGCTTTCATCTACCTTAGAGCAAGCCCTGATACTTGTCAC
AAGAGAATGATGCATAGGAAAAGGGCAGAAGAAGGGGGAGTCAGCCTAGATTATCTTTGTGATCTGCATGAGAAACATGAGAGCTGGCTTTTCCCATTTG
AAAGTGGTAATCATGGGGTGCTTTCTGTGAGTAAGCTTCCACTAAATCTGGATAATTCACTACATCCTGATATAAAAAACAGGGTGTTTTATTTGGAAGG
CGATCATATGCATTCAAGTATTCAAAAGGTCCCTGCTTTGATTCTTGATTGCGAAGCCAACATTGATTTTAGCAGGGATGTTGAAGCTAAGGAGAACTAT
GCGCGCCAAGTTGCTGAGTTCTTTAAACATGTGAAGCAAATGAAGGAAGTTTCATCAACAAAAGCTGATGAAGGTGGTGTTAACCAGCAAAACGTCATAC
TTCCTCATGAAGGTGGGTTGATTTTACCAAATGGAACACGCTTCCCTGAGCATGCTCTCAAATCCTTAGATTTTTCTCGAGCCATGTCACTCCTGTCTGA
TCAGTGA
AA sequence
>Potri.013G109400.1 pacid=42811390 polypeptide=Potri.013G109400.1.p locus=Potri.013G109400 ID=Potri.013G109400.1.v4.1 annot-version=v4.1
MQKLLQRYPSSPPLLCTPVSTSFFLFKNKPYPSFSMPTATNFCTSTSFLAAFVAKKLTITPTLTSRFYSTTYCTCRSAVGYKTTNPLRAWVVARPAWHCT
VASGQEGPFGTAAAAADAEGVRSSGDGEEEGKGEKSEKGAEEKTARLSRRQKRTGGDMEGNADLLTIPGVGPKNLRKLVEKGFTGMAELKQFYKDKFLGK
SSETMVEYLQSSVGIIHKNHAESITSFIQESVDEELKVLNPDARPKPKKRLTFCVEGNISVGKTTFLKRIVSDTIELRDLVEVVPEPIDKWQDVGPDHFN
ILDAFYADPSRYAYTFQNYVFVTRVMQERESSDGLKPLRLMERSVFSDRMVFVRAVHEAKWMNEMEISIYDSWFDPVVSVLPGLIPDAFIYLRASPDTCH
KRMMHRKRAEEGGVSLDYLCDLHEKHESWLFPFESGNHGVLSVSKLPLNLDNSLHPDIKNRVFYLEGDHMHSSIQKVPALILDCEANIDFSRDVEAKENY
ARQVAEFFKHVKQMKEVSSTKADEGGVNQQNVILPHEGGLILPNGTRFPEHALKSLDFSRAMSLLSDQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G72040 P-loop containing nucleoside t... Potri.013G109400
[exp]
0 1
AT3G52170 DNA binding (.1.2) Potri.010G231900
[exp]
6.08 0.9406
AT5G66520 Tetratricopeptide repeat (TPR)... Potri.017G087000
[exp]
7.41 0.9157
AT4G33760 tRNA synthetase class II (D, K... Potri.009G084300
[exp]
10.24 0.9224
AT3G16260 TRZ4 tRNAse Z4 (.1) Potri.001G186900
[exp]
11.31 0.9051
AT3G04260 PDE324, PTAC3 PIGMENT DEFECTIVE 324, plastid... Potri.019G025100
[exp]
11.35 0.9275
AT1G09830 Glycinamide ribonucleotide (GA... Potri.004G225500
[exp]
17.49 0.9217
AT1G73090 unknown protein Potri.010G250100
[exp]
18.16 0.9068
AT3G54470 uridine 5'-monophosphate synth... Potri.001G026300
[exp]
19.28 0.8665
AT1G63680 APG13, ATMURE, ... PIGMENT DEFECTIVE EMBRYO 316, ... Potri.001G103300
[exp]
23.36 0.9241 Pt-PDE316.1
AT3G06430 AtPPR2, EMB2750 pentatricopeptide repeat 2, em... Potri.010G153900
[exp]
23.83 0.9266

Potri.013G109400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.