Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35530 1236 / 0 DEAD/DEAH box RNA helicase family protein (.1.2) AT3G03300 90 / 9e-18 ATDCL2, DCL2 dicer-like 2 (.1.2.3) AT1G36020 79 / 4e-17 unknown protein AT5G20320 85 / 3e-16 DCL4, ATDCL4 dicer-like 4 (.1.2) AT1G01040 63 / 2e-09 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) AT1G12770 53 / 1e-06 ISE1, EMB1586 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G26742 53 / 1e-06 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT1G16280 51 / 5e-06 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT3G43920 50 / 1e-05 DCL3, ATDCL3 dicer-like 3 (.1.2.3) AT5G51280 50 / 2e-05 DEAD-box protein abstrakt, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G110200 [exp] 505 / 2e-168 AT1G35530 0 / 1 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.006G188800 [exp] 62 / 3e-09 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2) Potri.002G181400 [exp] 61 / 7e-09 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Potri.008G075900 [exp] 60 / 1e-08 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3) Potri.010G181400 [exp] 60 / 2e-08 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3) Potri.002G194600 [exp] 56 / 2e-07 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G047500 [exp] 56 / 3e-07 AT3G43920 1518 / 0.0 dicer-like 3 (.1.2.3) Potri.015G133400 [exp] 53 / 1e-06 AT5G62190 785 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.005G000100 [exp] 53 / 2e-06 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009444 [exp] 1120 / 0 AT1G35530 953 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Lus10006082 [exp] 535 / 2e-175 AT1G35530 469 / 3e-151 DEAD/DEAH box RNA helicase family protein (.1.2) Lus10006089 [exp] 297 / 4e-88 AT1G35530 251 / 2e-72 DEAD/DEAH box RNA helicase family protein (.1.2) Lus10019588 [exp] 90 / 9e-18 AT5G20320 1152 / 0.0 dicer-like 4 (.1.2) Lus10000430 [exp] 65 / 2e-10 AT3G62300 84 / 3e-17 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10005142 [exp] 66 / 3e-10 AT1G01040 2012 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10030176 [exp] 65 / 4e-10 AT1G01040 972 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10016367 [exp] 62 / 4e-09 AT3G43920 1457 / 0.0 dicer-like 3 (.1.2.3) Lus10036447 [exp] 59 / 3e-08 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3) Lus10019757 [exp] 55 / 7e-07 AT3G43920 1379 / 0.0 dicer-like 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.013G109600.1 pacid=42810941 polypeptide=Potri.013G109600.1.p locus=Potri.013G109600 ID=Potri.013G109600.1.v4.1 annot-version=v4.1 ATGAAATCAACAGTTCCTTTCCAAATAATCGACGACGACGACGAATTTGATTGGGAGGCAGCAGTCAGAGAAATCGATTCCGCTTGTGAAAGAGCAAATA ACCCTTCATCTACTACAATTAATCAAGCTTCTTCTTCCAATTTTACCCCTCCCGTTAATATTCTTAATAATTCTTCTTATTATTCATGTACAAAGACTGC GACTTCCAAGCAATCCACGCTCGATAAGTTTATTGGCAGAGCGAATCCGCCGGTGAAGCCAACGGTTGAGGTCCGACATCATCAGGGTAATGGCATCTTC AACAGTGATGGGAGGCCGTGTTGCGTTGAGATTGATGCCGAGGCAGCTAAAACTTGGATTTACCCAGTCAATGTACCTCTCCGGGAATATCAATTAGCTA TAACAAAGACCGCATTATTTACAAACACATTGGTTGCATTGCCAACTGGGCTCGGAAAGACGCTTATTGCTGCTGTTGTTATGTATAACTACTTCAGATG GTTTCCTGATGGTAAAATAGTTTTTGCTGCTCCTTCTCGACCGCTTGTGATGCAACAAATAGAAGCATGCCATAATATTGTGGGGATACCACAAGAGTGG ACAATTGATATGACCGGCCAGGTATGCCCTACAAAAAGGGCATGTTTTTGGAAAACTAAACGAGTTTTCTTTGTTACTCCACAAGTGCTGGAAAAGGATA TTCAATCTGGAACATGTCTGGCAAAACACTTGGTTTGTTTGGTAATTGATGAGGCTCATAGAGCATCAGGAAATTATTCTTACTGTGTAGCAATTCGCGA GTTGTTGGCCATACCAGTGCAACTGAGAATATTAGCATTGACTGCGACTCCAGGATCAAAACAGCCGGCTGTCCAGCATATCATTGATAACTTACAGATA TCAGCTCTTGAATATCGTAATGAAAGTGATCCTGATGTTATTCCATATGTTCATGACAGAAAGATTGAACTAATTGAGGTTGCATTGGGGAAAGAAGCTG TTGATATTAACAAACGGCTATTGGAAGTGATACGTCCATATGTGGCAAGGCTTTCTACACTTGGACTTCTCCAGAATAGAGACTATCAAACATTAAGCCC ACCTGATTTACTCAACTCAAGAGATAAATTTCGCCGAGCACCTCCTCTGGACCTTCCCCAGAACAGATATGGAGAAATTGAAGCTTGTTTTGGAGGTCTT ATTACTCTTTACCACATCCGTAAGCTCCTTTCAAGTCATGGAATAAGGCCAGCATATGAGATGCTGGAAGAAAAGTTGAAACAATGGTCATTTGCAAGAC TGATGGGTAAAAATGAAGATATTAGGAAAATAAAGCTTTTAATGCAACAAAGCTTGTCTCATGGTGCACCCAGTCCCAAATTGTCAAAAATGTTGGAAGT ACTTGTTGACCATTTCAAAACTAAGGATCCACAAAACTCAAGGGTTATAATTTTCTCCAATTTTAGAGGAAGTGTAAGGGATATAATGAACACATTAGCA ACCATTGGAGATCTGGTTAAAGCAACTGAGTTTATTGGTCAAAGTTCAGGAAAAGCATTGAAAGGCCAATCACAGAAAGTTCAACAGGCTGTATTGCAGA AATTTCGAGCCGGGGGATACAATGTAATTGTTGCAACATCAATTGGTGAAGAAGGCCTAGATATCATGGAAGTTGATCTTGTAGTATGTTTTGATGCTAA TGTATCACCATTGAGAATGATTCAACGCATGGGAAGAACTGGAAGGAAGCATGATGGACGAGTTGTAGTTTTAGCTTGTGAAGGGTCTGAGTTGAAGGGT TACATGCGAAAGCAAGCAAACAGCAGGGCAATAAAGAAGCATATGCATAATGGGGGGATAAATAGCTTCAGTTTCCATTCTAGCTCAAGAATGATTCCTC ATATTTTTAAACCAGAAGTCCAATTTGTTGAGCTGTCAATTGAACAATATGTTCCTCGTGGAAAGAAAGTGAAGGATGATAATACCATTCAGACACCAGT TTTCAAAGAAAATCTAACTGTTGCAGAGACTGCTTTACTTGCCAAGTATTTCCACCCCGGAAATACTTGGACACCATCTCTGATTGCCTTTCCTCGTTTC CAATCATTTCCATCCAGAGTGCACAGAGTAATGCATTCTCACCGTACAGAGATGCTGATTGACTCAATGCAACATTTGCAAGATCTAACATTTACTAGGG AATGCGGAGCTTTCTCTGCTGAGGATGAAGCCTCTTCACGTAAGTGCTTGGAAGCTAACCCTGTTCAAGAAGGGGATAATGTCAATGAAGATGTTGCAGG TCCAGTGACATGGGACAATCCTCCAAGCACCAAATCACAGGAAAAAGTAGTAGATTCTGAAGAATCACCCATACAAACCTTGAGAACTGACAACGAGCAC AGTATGCTGGATCTTAACAAACTATGTCGTCCAGCTCATTCCTATCTGTTTGGTTCAGATTATGTATCTGTAGATTCTGTTGGGAAGGTCCTAATTATGT CTGTCCCTTTATTTCCTTCCGAAGAAGCAGCACATTCTAAGGGTCAAAGTTCCTTAAATCAAAATTCTTGCTGTTGGAAGACTCCAGGTCAAAAGGACAA AGAATTAACCACCCCACACAAATCCTCTATGGACCTGACAACTTCTGAGACACAGTACAAAATGAATGCCACTCTGGCAATATCTAGATCATCTAACTCT ATTTCCCAGCAAGAGAAAACATTGGATCTGATGGAAACAATTCCCGAGGCTCCAATTTTGAAGAGAAATCTACCAAATGAAGAAGATTGTGCCAGCAAGT CTCTTGATGTTTTGGGAATCAAGGCATCGTCTCTGCAGGCTGATGAGTTCAATAATAATTTCAAAGATTCTGAGCTGAGCCCCCGATTAACAAATATGAT TCAAAGTGGTATTGTTCCAGAGTCTCCAATCAATGACAACGGACTGTTAAATGATGAAGGAACAAATGAATTTATTGTTCAGGACCTCATTTCACCCACG AAACTGTGCACTGAACTGCCGTCAAAATTACAGACTTCACAAAAAAATGAAACTGTCATGAATAGCCATGATTGTCAAAAAAACATTTCAGTTTCTCCGA GTAATAATGAAATTGAAACTCCTCTACTAAAGGTGAAGAATGTTGCAAGAAAAGGTAGATTTATGTCAATTTCTCCAGTGGTTGAGGAAACTGATTCTCC CTCGGCAAATCTTACAAAAAGCAGCAACAGTAAAGATTGGCTTTTGAGTTCTGGAAACAAGTTAGAAGATGTTGAACGAGTTTGCAAGTTCAAAAGGCTG CGGAAAGTTGGAGATATTGGAGAGAGAAAAAATTCAAAGGGCACAATAGAAAATTCTACAATCCCTATCAAAAACCTTAATAGATCCTTTTCAGGTAAAA AGAAGCGAGTTGGCAGTGCCAGGGCCTTCATTGAGGAGGAAGCTGAAGTATCTTCGGAAGCTGAAATATCTGATGACGAGGCAGATGACCTGGGAAACAG TTCAAATGATGATAGTTTCATAGATGACAGGATAAATCCAACAGTGGCAAGTGCTGATTCCAAAGCTAGCAGAGCTGACATGATGGCAGTTTACAGGCGT TCTTTGCTCAGCCAATCACCAATGGCAAGGGAATCTAGTTCTAGTGCCACCTTTACTCCTGATTACGGGGCGTCTACAAGTAGAATGAATGGAAGTGGGA GCTCCTCGGTCAAGACACCTCAAACTGATTCAGCCAATCAGTCTGCTGGAAGGGATTTAGGACCCTTCCAAATCAACCAAGAGAGGTTCTCTGCAGCAAG GCCCTGTACAACCACTGATTTTAAGAGAGAGAACGAGACAAGATCAGAAACCAGGAAAGGAAATTTTAGTTTTTGTCAATCATCTATTCCTGTTCTGAAC TTAGAGCAAAAGTTCTCTTCGCAGTCAGAGGTTCCAGAGAAAGCATCATTCCAGCAAGGTCCGGCAGACGAAATTGATGCCAATGAGGACATATTCTATG ATGATTTTTTTGCCACTCTTGATCTTGATGCTGTGGAAGCACAAGCTACATTACTTCCCAAACAACGATCAGACTTGTCCGTACAAAAGCAGGATGTGAT TCTAAAATCAGACCTACAAGGTTCCCCATCATTTGATCTTGGGATATTGTAA
AA sequence Show only first row Show all	>Potri.013G109600.1 pacid=42810941 polypeptide=Potri.013G109600.1.p locus=Potri.013G109600 ID=Potri.013G109600.1.v4.1 annot-version=v4.1 MKSTVPFQIIDDDDEFDWEAAVREIDSACERANNPSSTTINQASSSNFTPPVNILNNSSYYSCTKTATSKQSTLDKFIGRANPPVKPTVEVRHHQGNGIF NSDGRPCCVEIDAEAAKTWIYPVNVPLREYQLAITKTALFTNTLVALPTGLGKTLIAAVVMYNYFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEW TIDMTGQVCPTKRACFWKTKRVFFVTPQVLEKDIQSGTCLAKHLVCLVIDEAHRASGNYSYCVAIRELLAIPVQLRILALTATPGSKQPAVQHIIDNLQI SALEYRNESDPDVIPYVHDRKIELIEVALGKEAVDINKRLLEVIRPYVARLSTLGLLQNRDYQTLSPPDLLNSRDKFRRAPPLDLPQNRYGEIEACFGGL ITLYHIRKLLSSHGIRPAYEMLEEKLKQWSFARLMGKNEDIRKIKLLMQQSLSHGAPSPKLSKMLEVLVDHFKTKDPQNSRVIIFSNFRGSVRDIMNTLA TIGDLVKATEFIGQSSGKALKGQSQKVQQAVLQKFRAGGYNVIVATSIGEEGLDIMEVDLVVCFDANVSPLRMIQRMGRTGRKHDGRVVVLACEGSELKG YMRKQANSRAIKKHMHNGGINSFSFHSSSRMIPHIFKPEVQFVELSIEQYVPRGKKVKDDNTIQTPVFKENLTVAETALLAKYFHPGNTWTPSLIAFPRF QSFPSRVHRVMHSHRTEMLIDSMQHLQDLTFTRECGAFSAEDEASSRKCLEANPVQEGDNVNEDVAGPVTWDNPPSTKSQEKVVDSEESPIQTLRTDNEH SMLDLNKLCRPAHSYLFGSDYVSVDSVGKVLIMSVPLFPSEEAAHSKGQSSLNQNSCCWKTPGQKDKELTTPHKSSMDLTTSETQYKMNATLAISRSSNS ISQQEKTLDLMETIPEAPILKRNLPNEEDCASKSLDVLGIKASSLQADEFNNNFKDSELSPRLTNMIQSGIVPESPINDNGLLNDEGTNEFIVQDLISPT KLCTELPSKLQTSQKNETVMNSHDCQKNISVSPSNNEIETPLLKVKNVARKGRFMSISPVVEETDSPSANLTKSSNSKDWLLSSGNKLEDVERVCKFKRL RKVGDIGERKNSKGTIENSTIPIKNLNRSFSGKKKRVGSARAFIEEEAEVSSEAEISDDEADDLGNSSNDDSFIDDRINPTVASADSKASRADMMAVYRR SLLSQSPMARESSSSATFTPDYGASTSRMNGSGSSSVKTPQTDSANQSAGRDLGPFQINQERFSAARPCTTTDFKRENETRSETRKGNFSFCQSSIPVLN LEQKFSSQSEVPEKASFQQGPADEIDANEDIFYDDFFATLDLDAVEAQATLLPKQRSDLSVQKQDVILKSDLQGSPSFDLGIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G35530			DEAD/DEAH box RNA helicase fam...		Potri.013G109600 [exp]	0	1
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	8.83	0.7481
AT5G04480			UDP-Glycosyltransferase superf...		Potri.010G232000 [exp]	10.04	0.7578
AT5G07380			unknown protein		Potri.015G109700 [exp]	12.64	0.6818
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.012G143200 [exp]	13.26	0.6738
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Potri.008G025900 [exp]	17.43	0.6902
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.003G074200 [exp]	19.87	0.7246
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.010G142700 [exp]	20.59	0.7274
AT5G07740			actin binding (.1)		Potri.015G061001 [exp]	21.21	0.7075
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.010G245100 [exp]	22.24	0.6914	NTN2.2
					Potri.010G220800 [exp]	32.64	0.6717

Compare expression of checked genes

Potri.013G109600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.