Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07610 61 / 8e-10 F-box family protein (.1) AT1G15680 54 / 8e-08 F-box family protein (.1) AT5G65850 52 / 4e-07 F-box and associated interaction domains-containing protein (.1) AT4G19940 51 / 1e-06 F-box and associated interaction domains-containing protein (.1) AT2G31470 49 / 3e-06 DOR DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) AT1G50870 49 / 5e-06 F-box and associated interaction domains-containing protein (.1) AT1G33530 46 / 3e-05 F-box family protein (.1) AT1G47790 44 / 9e-05 F-box and associated interaction domains-containing protein (.1) AT5G49610 44 / 9e-05 F-box family protein (.1) AT2G16810 44 / 0.0001 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G110300 [exp] 746 / 0 AT5G07610 54 / 7e-08 F-box family protein (.1) Potri.013G109701 [exp] 428 / 1e-150 ND / Potri.008G016300 [exp] 100 / 1e-24 AT5G07610 53 / 2e-08 F-box family protein (.1) Potri.008G016150 [exp] 78 / 5e-17 AT5G07610 42 / 9e-05 F-box family protein (.1) Potri.008G038000 [exp] 67 / 5e-12 AT1G64290 175 / 3e-51 F-box protein-related (.1) Potri.018G132800 [exp] 63 / 9e-11 AT5G07610 158 / 1e-43 F-box family protein (.1) Potri.010G224400 [exp] 62 / 2e-10 AT1G64295 161 / 1e-45 F-box associated ubiquitination effector family protein (.1) Potri.011G000700 [exp] 60 / 1e-09 AT3G15910 58 / 5e-09 unknown protein Potri.013G065500 [exp] 57 / 7e-09 AT5G07610 155 / 6e-43 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022006 [exp] 55 / 5e-08 AT5G03970 400 / 2e-138 F-box associated ubiquitination effector family protein (.1.2) Lus10042547 [exp] 54 / 8e-08 AT5G03970 405 / 3e-140 F-box associated ubiquitination effector family protein (.1.2) Lus10040838 [exp] 52 / 5e-07 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10039593 [exp] 48 / 3e-06 AT4G12560 75 / 9e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10041733 [exp] 49 / 4e-06 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10024021 [exp] 47 / 1e-05 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10007855 [exp] 47 / 1e-05 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10013872 [exp] 46 / 3e-05 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10003029 [exp] 45 / 8e-05 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10029527 [exp] 45 / 0.0001 AT3G07870 70 / 6e-13 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.013G109900.1 pacid=42812282 polypeptide=Potri.013G109900.1.p locus=Potri.013G109900 ID=Potri.013G109900.1.v4.1 annot-version=v4.1 ATGGCCGTGCAGTTGCCAGACGACATGATAGTTGAAATTCTATGTCGATTACCAGTAAAGGTGGTGATGAGATTGAAGGTTGTTTCAAAAACATGGCATC GTCTCATATCTAATGTTTGTGCCCCGCTATTCTCGGCCGCCGCCGCGGCCCATCCTTCAGGCTTTTTGTTCCTATGTTCTTTTCAAATAATTGGTGGGTT GGGATACTTTGCTGCGTATGCTAGCTATCCCGATGTTCATGATTGCGTGGGCCAGACCGATGGATTTGTGGATTCGTATGCTTGTATGTTGCCCTTCATG CTTTCTTCCGATCATTATTTTGATTGTTGTAATGGGTTGCTCTTGTTTGTTAGAAGAGAGCAACGAGAGGCTCTTCCGCATTATTATTTTGTTTGCAACA CCACTACCAGACAATGCGTTGCAATTCCTAATCCCCGTCCACGAACTGCTCCATTCGCCGCTGCAATTGCCTATGATCCTGCCAAATCTCCTCACTACAA AGTTGTTCGCTTTATTTATTTGGAAGAAAAGACTTCTTGCCCGGTAAAGCTGGATATATTTTCTTCCGATACCGGAAAGTGGGTTAGGCGCGGGGTCATG TTATCCACCGAACTTCCTCTTGCTGCTGCTGATGCAGATAAGTATGGTTGTATCAGGCGTTCTATTTATTTGGATGGAATGATTTACAAGCTATCCTTTG TCGTCAACTACCTCATCAGGTTTGACTTAAATGCGCCGAGCGATGTGGCTATTGAACTCCCGCACAAGAATGCCGCTGACCGCCATGGATTCATTGGGAT GTCTAGAGGAAGCTTGTATTATTCAAATCAAGACGAGTCTGGATTGATGATCTCCATTTGGCTTTTGGAAGACCGTTGCAAACGTGATCCTTTTTGGAAA CTCACACATAACATCTCAGTGGACTCCTTGACGTCCAAATATCCTGACGTGCGTAATTCAGGCTTTCATTTTCATACATATGCTATTCATCCAGCTTCTG ATATTATTTTTCTTGGAAACCCTACCATGGTCTTAAGTTACGATCTTAAATCCAACAAATCCGAAGATGTTTTTACATTGTCTAGCGGATTAGAAATATC ATCGGGCCAGCATTTTGTACACCTCTACTCTCCCTGTTATGCTGTTTTGAGTAATTTTGATAATAATTGTGGTTAA
AA sequence Show only first row Show all	>Potri.013G109900.1 pacid=42812282 polypeptide=Potri.013G109900.1.p locus=Potri.013G109900 ID=Potri.013G109900.1.v4.1 annot-version=v4.1 MAVQLPDDMIVEILCRLPVKVVMRLKVVSKTWHRLISNVCAPLFSAAAAAHPSGFLFLCSFQIIGGLGYFAAYASYPDVHDCVGQTDGFVDSYACMLPFM LSSDHYFDCCNGLLLFVRREQREALPHYYFVCNTTTRQCVAIPNPRPRTAPFAAAIAYDPAKSPHYKVVRFIYLEEKTSCPVKLDIFSSDTGKWVRRGVM LSTELPLAAADADKYGCIRRSIYLDGMIYKLSFVVNYLIRFDLNAPSDVAIELPHKNAADRHGFIGMSRGSLYYSNQDESGLMISIWLLEDRCKRDPFWK LTHNISVDSLTSKYPDVRNSGFHFHTYAIHPASDIIFLGNPTMVLSYDLKSNKSEDVFTLSSGLEISSGQHFVHLYSPCYAVLSNFDNNCG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07610			F-box family protein (.1)		Potri.013G109900 [exp]	0	1
AT5G07610			F-box family protein (.1)		Potri.013G110300 [exp]	6.08	0.7166
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.010G043800 [exp]	13.85	0.7863
					Potri.009G113550 [exp]	16.37	0.7769
AT4G34320			Protein of unknown function (D...		Potri.004G150800 [exp]	16.97	0.7176
AT5G18980			ARM repeat superfamily protein...		Potri.008G200500 [exp]	17.23	0.7258
AT3G57120			Protein kinase superfamily pro...		Potri.008G037401 [exp]	26.15	0.7495
AT5G60800			Heavy metal transport/detoxifi...		Potri.009G007600 [exp]	26.45	0.7471
					Potri.006G171212 [exp]	27.42	0.7543
AT4G19460			UDP-Glycosyltransferase superf...		Potri.003G105500 [exp]	30.98	0.7586
AT5G34930			arogenate dehydrogenase (.1)		Potri.006G062600 [exp]	33.91	0.7498

Compare expression of checked genes

Potri.013G109900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.