Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35530 312 / 2e-97 DEAD/DEAH box RNA helicase family protein (.1.2) AT1G36020 76 / 8e-17 unknown protein AT1G01040 52 / 4e-07 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) AT3G03300 47 / 2e-05 ATDCL2, DCL2 dicer-like 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G109600 [exp] 498 / 3e-166 AT1G35530 1234 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.010G181400 [exp] 50 / 1e-06 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3) Potri.002G181400 [exp] 50 / 2e-06 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Potri.008G075900 [exp] 48 / 6e-06 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3) Potri.006G188800 [exp] 47 / 2e-05 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2) Potri.018G047500 [exp] 45 / 6e-05 AT3G43920 1518 / 0.0 dicer-like 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009444 [exp] 311 / 2e-96 AT1G35530 953 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Lus10006089 [exp] 100 / 1e-23 AT1G35530 251 / 2e-72 DEAD/DEAH box RNA helicase family protein (.1.2) Lus10000430 [exp] 62 / 2e-10 AT3G62300 84 / 3e-17 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10030176 [exp] 58 / 4e-09 AT1G01040 972 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10016367 [exp] 47 / 2e-05 AT3G43920 1457 / 0.0 dicer-like 3 (.1.2.3) Lus10036447 [exp] 45 / 5e-05 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3) Lus10019588 [exp] 43 / 0.0004 AT5G20320 1152 / 0.0 dicer-like 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.013G110200.2 pacid=42811589 polypeptide=Potri.013G110101.1.p locus=Potri.013G110200 ID=Potri.013G110200.2.v4.1 annot-version=v4.1 ATGACATCAACAGTTCCTTTCCAAATAATCGTCGACGACGACGAATTTGATTGGGAGGCAGCAGTCAGAGAAATCGATGCCTCTTGTGAAAGAGCGAATA ACCCTTCATCTACTACAATTAATCAAGCTTCTTCTTCCAATTTTACCCCTCCCGTTAATATTCTTAATAATTCTTCTTATTCTTCATGTACAAAGACTGG GACTTGCAAGCAATCCACGCTCGATAAGTTTATTGGCAGAGCGAATCCGCCGGTGAAGCCAACGGTTGAGGTCCGACATCCTCAGGGTAATGGCATCATC AACAGTGATGGGAGGTCGTGTTGCGTTGAGATCGATGCTGAGGCAGCTAAAACTTGGATTTTCCCAGTCAATGTACCTCTCAGAGACTATCGATTAGCTA TTACAAAGACCGCGTTATTTACAAACACATTGGTTGCATTGCCAACTGGGCTCGGAAAGACGCTTAGTGCTGCTGTTGTTATGTATAACTACTTCAGATG GTTTCCTGATGATTTGATGGAAGGCTATGGGTTAGGGGAAAAATCTAGTGGTAAAATAGTTTTTGCTGCTCCTTCTCGACCGCTTGTGATGCAACAAATA GAAGCATGCCATAATATTGTGGGGATACCACAAGAGTGGACAATTGATATGACCGGCCAGGTATGCCCTCCAAAAAGGGCATGTTTTTGGAAAACTAAAC GAGTTTTCTTTGTTACTCCACAAGTGCTGGAAAAGGATATTCAGTCTGGAACATGTCCGGCAAAACACTTGGTTTGTTTGGTAATTGATGAGGCTCATAG AGCATCAGGAATTAAATTATTCTTACTGTGTAGCAATTCGCGAGTTGCTGGCCATACCAGTGCAACTGAGAATATTAGCATTGACTGCGACTCCAGGATC AAAACAGCCGGCTGTCCAGCATATCATTGA
AA sequence Show only first row Show all	>Potri.013G110200.2 pacid=42811589 polypeptide=Potri.013G110101.1.p locus=Potri.013G110200 ID=Potri.013G110200.2.v4.1 annot-version=v4.1 MTSTVPFQIIVDDDEFDWEAAVREIDASCERANNPSSTTINQASSSNFTPPVNILNNSSYSSCTKTGTCKQSTLDKFIGRANPPVKPTVEVRHPQGNGII NSDGRSCCVEIDAEAAKTWIFPVNVPLRDYRLAITKTALFTNTLVALPTGLGKTLSAAVVMYNYFRWFPDDLMEGYGLGEKSSGKIVFAAPSRPLVMQQI EACHNIVGIPQEWTIDMTGQVCPPKRACFWKTKRVFFVTPQVLEKDIQSGTCPAKHLVCLVIDEAHRASGIKLFLLCSNSRVAGHTSATENISIDCDSRI KTAGCPAYH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G35530			DEAD/DEAH box RNA helicase fam...		Potri.013G110200 [exp]	0	1
AT2G39920			HAD superfamily, subfamily III...		Potri.010G193500 [exp]	6.00	0.8253
AT3G49142			Tetratricopeptide repeat (TPR)...		Potri.005G005700 [exp]	7.93	0.8556
AT5G24620			Pathogenesis-related thaumatin...		Potri.015G000800 [exp]	14.69	0.8091
AT3G21330	bHLH	bHLH087	basic helix-loop-helix (bHLH) ...		Potri.017G041000 [exp]	18.54	0.8440
					Potri.001G174000 [exp]	21.33	0.8434
AT2G01460			P-loop containing nucleoside t...		Potri.010G111900 [exp]	21.90	0.7722
					Potri.004G100301 [exp]	25.69	0.7702
					Potri.018G110525 [exp]	26.83	0.8329
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.016G000400 [exp]	32.93	0.7788	RAB11.7
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Potri.012G049300 [exp]	34.89	0.7402

Compare expression of checked genes

Potri.013G110200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.