Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07610 54 / 7e-08 F-box family protein (.1) AT5G65850 51 / 6e-07 F-box and associated interaction domains-containing protein (.1) AT1G15680 51 / 7e-07 F-box family protein (.1) AT4G19940 50 / 2e-06 F-box and associated interaction domains-containing protein (.1) AT1G33530 47 / 1e-05 F-box family protein (.1) AT2G31470 46 / 3e-05 DOR DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) AT1G31090 44 / 0.0001 F-box family protein (.1) AT2G16810 44 / 0.0001 F-box and associated interaction domains-containing protein (.1) AT5G49610 44 / 0.0001 F-box family protein (.1) AT3G18910 44 / 0.0002 ETP2 EIN2 targeting protein2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G109900 [exp] 745 / 0 AT5G07610 61 / 7e-10 F-box family protein (.1) Potri.013G109701 [exp] 418 / 6e-147 ND / Potri.008G016300 [exp] 99 / 2e-24 AT5G07610 53 / 2e-08 F-box family protein (.1) Potri.008G016150 [exp] 78 / 4e-17 AT5G07610 42 / 9e-05 F-box family protein (.1) Potri.011G000700 [exp] 65 / 2e-11 AT3G15910 58 / 5e-09 unknown protein Potri.018G132800 [exp] 64 / 7e-11 AT5G07610 158 / 1e-43 F-box family protein (.1) Potri.008G038000 [exp] 63 / 8e-11 AT1G64290 175 / 3e-51 F-box protein-related (.1) Potri.010G224400 [exp] 56 / 3e-08 AT1G64295 161 / 1e-45 F-box associated ubiquitination effector family protein (.1) Potri.017G066400 [exp] 54 / 5e-08 AT1G64295 125 / 9e-33 F-box associated ubiquitination effector family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040838 [exp] 54 / 2e-07 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10022006 [exp] 52 / 4e-07 AT5G03970 400 / 2e-138 F-box associated ubiquitination effector family protein (.1.2) Lus10039593 [exp] 49 / 2e-06 AT4G12560 75 / 9e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10007855 [exp] 47 / 1e-05 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10013872 [exp] 47 / 2e-05 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10041733 [exp] 46 / 4e-05 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10003029 [exp] 45 / 7e-05 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10018106 [exp] 44 / 0.0001 AT3G06240 95 / 3e-21 F-box family protein (.1) Lus10006687 [exp] 44 / 0.0001 AT4G12560 81 / 5e-17 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10024021 [exp] 44 / 0.0001 AT5G07610 79 / 9e-16 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.013G110300.2 pacid=42811326 polypeptide=Potri.013G110300.2.p locus=Potri.013G110300 ID=Potri.013G110300.2.v4.1 annot-version=v4.1 ATGGCCGTGCAGTTGCCAGACGACATGATAGTTGAAATTCTATGTCGATTACCAGTAAAGGTGGTGATGAGATTGAAGGTTGTTTCAAAAGCATGGCATC GTCTCATATCTAATGTTTGTGCCCCGCTATTCTCGGCCGCGGCGGCGGCCCATCCTTCAGGCTTTTTGTTCCTATGTTCTTTTCAAATAATTGGTGGGTT GGGATACTTTGCTGCGTATGCTAGCTATCCCGATGTTCGTGATTGCGTGGGCCAGACCGATGGATTTGTGGATTCGTATGCTTGTATGTTGCCCTTCATG CTTTCTTCCGATCATTATTTTGATTGTTGTAATGGGTTGCTCTTGTTTGTTAGAAGAGAGCAACGGGAGGCTCTTCCGCATTATTATTTTGTTTGCAACA CCACTACCAGACAATGCGTTGCAATTCCTAATCCCCGTCCACGAACTGCTCCATTCGCCGCTGCAATTGCCTATGATCCTGCCAAATCTCCTCACTACAA AGTTGTTCGCTTTATTTATTTGGAAGAAAAGACTTCTTGCCCGGTAAAGCTGGATATATTTTCTTCCGATACCGGAAAGTGGGTTAGGCGCGGGGTCATG TTATCCACCGAACTTCCTCTTGCTGCTGCAGATGCAGATAAGTATGGTTGTATCAGGCGTTCTATTTATATGGATGGAATGATTTACAAGCTATCCTTTG TCGTCAACTACCTCATCAGGTTTGACTTAAATGCGCCGAGCGATGTGGCAATTGAACTCCCGCACAAGAATGCCGCTGCCTGCCATGGATTCATTGGGAT GTCTAGAGGAAGCTTGTATTATTCAAATCATGACGAGTCTGGATTGATGATCTCCATTTGGCTTTTGGAAGACCGTTGCAAACGTGATCCTTTTTGGAAA CTCACACATCGCATCTCAGTGGACTCCTTGACGTCCAAATATCCTGACGGGCGTAATTCAGGCTTGCATTTTCATACATATGCTATTCATCCAGCTTCTG ATATTATTTTTCTTGGAAAACCTAACATGGTCTTAAGTTACGATCTTAAATCCAACAAATCCGAAGAGGTTTTTACATTGTCTAGCGGATTAGAAATATC ATCGGGCCAGCATTTTGTACACCTCTACTCTCCCTGTTATGCTGTTTTGAGTAATTTTGATAATAATTGTGGTTAA
AA sequence Show only first row Show all	>Potri.013G110300.2 pacid=42811326 polypeptide=Potri.013G110300.2.p locus=Potri.013G110300 ID=Potri.013G110300.2.v4.1 annot-version=v4.1 MAVQLPDDMIVEILCRLPVKVVMRLKVVSKAWHRLISNVCAPLFSAAAAAHPSGFLFLCSFQIIGGLGYFAAYASYPDVRDCVGQTDGFVDSYACMLPFM LSSDHYFDCCNGLLLFVRREQREALPHYYFVCNTTTRQCVAIPNPRPRTAPFAAAIAYDPAKSPHYKVVRFIYLEEKTSCPVKLDIFSSDTGKWVRRGVM LSTELPLAAADADKYGCIRRSIYMDGMIYKLSFVVNYLIRFDLNAPSDVAIELPHKNAAACHGFIGMSRGSLYYSNHDESGLMISIWLLEDRCKRDPFWK LTHRISVDSLTSKYPDGRNSGLHFHTYAIHPASDIIFLGKPNMVLSYDLKSNKSEEVFTLSSGLEISSGQHFVHLYSPCYAVLSNFDNNCG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07610			F-box family protein (.1)		Potri.013G110300 [exp]	0	1
AT3G06240			F-box family protein (.1)		Potri.001G318300 [exp]	5.09	0.6728
AT5G07610			F-box family protein (.1)		Potri.013G109900 [exp]	6.08	0.7166
AT1G72810			Pyridoxal-5'-phosphate-depende...		Potri.001G199100 [exp]	15.58	0.6626
AT5G34930			arogenate dehydrogenase (.1)		Potri.006G062600 [exp]	21.95	0.7162
AT3G15040			Protein of unknown function, D...		Potri.016G076300 [exp]	72.52	0.5745
AT3G54850		ATPUB14	plant U-box 14 (.1)		Potri.010G226500 [exp]	73.68	0.5980
AT5G59440		ATTMPK.2, ATTMP...	ZEUS1, ARABIDOPSIS THALIANA TH...		Potri.001G334900 [exp]	92.09	0.5760
					Potri.007G039601 [exp]	93.11	0.6544
AT4G22760			Tetratricopeptide repeat (TPR)...		Potri.001G116350 [exp]	101.74	0.5935
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.001G219250 [exp]	131.90	0.6268

Compare expression of checked genes

Potri.013G110300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.