Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22660 637 / 0 Polynucleotide adenylyltransferase family protein (.1.2) AT1G28090 61 / 2e-09 Polynucleotide adenylyltransferase family protein (.1.2.3) AT5G23690 58 / 9e-09 Polynucleotide adenylyltransferase family protein (.1) AT2G17580 57 / 3e-08 Polynucleotide adenylyltransferase family protein (.1) AT3G48830 55 / 1e-07 polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G100100 [exp] 63 / 4e-10 AT2G17580 459 / 4e-150 Polynucleotide adenylyltransferase family protein (.1) Potri.015G104300 [exp] 62 / 5e-10 AT5G23690 637 / 0.0 Polynucleotide adenylyltransferase family protein (.1) Potri.012G105000 [exp] 59 / 8e-09 AT5G23690 663 / 0.0 Polynucleotide adenylyltransferase family protein (.1) Potri.003G164400 [exp] 55 / 1e-07 AT1G28090 569 / 0.0 Polynucleotide adenylyltransferase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025499 [exp] 794 / 0 AT1G22660 619 / 0.0 Polynucleotide adenylyltransferase family protein (.1.2) Lus10026711 [exp] 712 / 0 AT1G22660 542 / 0.0 Polynucleotide adenylyltransferase family protein (.1.2) Lus10036013 [exp] 62 / 5e-10 AT5G23690 649 / 0.0 Polynucleotide adenylyltransferase family protein (.1) Lus10016699 [exp] 60 / 4e-09 AT2G17580 453 / 1e-149 Polynucleotide adenylyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [poplar] [flax] NTP_transf PF01743 [poplar] [flax] PolyA_pol Poly A polymerase head domain
Representative CDS sequence Show only first row Show all	>Potri.013G111300.1 pacid=42811681 polypeptide=Potri.013G111300.1.p locus=Potri.013G111300 ID=Potri.013G111300.1.v4.1 annot-version=v4.1 ATGAGAGCATTTCTCAACACTGTAAAACTCGACCCCCTCCGTCTTTTCTTCTCCCCAAGCCTCCTCAACAGACGCAAAACAAATTTCGTCTCTCTTCCAA GCTTTTCCTACCCAAGTAAAACCCTAACTCGAATTCAAACTCCTGGGGTTTTTTATTGTAAGGAAATGGCGACGGTGTCATCAGAGGCAGCAGCAAGAGC AGTGATTGAAGTGAAAGACAAGATTGAACTGAATGAGGTTGAAAAGCAGATTTTTGACCGCTTAGTCAACACTCTTCGCCATTTCAATCTCAATACTGAG CTCCGTGTAGCTGGGGGCTGGGTTCGTGATAAGCTTCTAGGCAAAGAATGTTGTGACATCGACATTGCTATCGACAATATGTTGGGCAGCGAATTTGTTG ATAAGGTTAGGGAATACTTGTTATCTACCGGGGAAGAGGCTCATGGAGTTGGGGTTATTCCACGCAATCCTGACCAGTCTAAACACTTGGAAACTGCAAG GATGCGTCTTCTTGATTTATGGATTGATTTTGTAAACTTAAGGAGTGAAGACTACAGTGAGAACAGCCGCATTCCTACTATGACATTTGGCACAGCAAAA GAAGACGCATATCGAAGGGATTTAACCATCAACAGCTTGTTCTACAATATCAATACCAGTTCTGTTGAAGACCTAACTGGAAGAGGCATTGAAGATCTAA AATCTGGAAAAATAGTAACTCCTTTACCTCCAAAAGATACCTTTTTGGATGACCCACTTCGAGTTCTGAGAGCTATTCGGTTTGGTGCAAGGTTTGGATT TGTACTTGAAGAAGAGCTTAAAGAAGCTGCTGCCTGTGATGATGTGAAAAACGCTCTCAAAGCAAAAATCAGCAAAGAGCGTATTGGAACTGAAATTGAT CTCATGATCTCTGGCAATCAACCTGTTAAAGCTATGACCTATATTGCTGATCTGACATTATTTTGGGTTGTCTTCAATCTTCACCCAAAGGTTGAGCCGA CAGTGTCAGAAGAATGTCAGGGGCTCTGTGTTGCTTATCTGGATGCTGCGTGGAACCTTATTCATTTAATTGGAGGTTCCTCCTTCACCGGTGAACAAAG AAGGCTTTGTTTGTATGCTGCTTTATTTCTTCCATTAAGAAACACCATATACAAGGATGAAAAGGGTAAAAAGGTGCCTGTTGTCAACTATATATTCAGA GACTCTCTGAAGCAAAAAGCCAGTGATCCTGAAACAGTTATCAAGATACACAGGTCATTAGAGAAATTCTTGACCTTGATTCCTTTGCTTACATCTAATG ACGATACACAGCCTGCTGAAGTGGATATGGGCATGGAACTTTTTGATGTACCTATAACATCAAAACTCCGAGTAGCAACAGGATTTTTACTACGGGAAGT TAAGGAATTTTGGCGAGTTGGTTTGTTGATATCAACAATGTTATATCCTTCTGACACGGACTCTACTCAAGACTTTTTAGAAAAGAAATTTGAACTTGAC AGGAGAAAGGACTTATTTAAAGCAGCTGAAGATGCCATTGTTAATCTAGGTCTTGAAAGAGTGTGGGATTTAAAGCCGTTGGTTAACGGGAAGGATATCA TGACTGTTTTGCAACTTAAATCCGGAGGACCGGTTGTTAAGGAATGGCAACAAAAACTGCTCGCATGGCAGTTCGCTCATCCTGCAGGGACCGTGGAGGA ATGCCTTGATTGGATGAAGGAAACACATTTGAAGCGTGCAAAGATGGAGTAA
AA sequence Show only first row Show all	>Potri.013G111300.1 pacid=42811681 polypeptide=Potri.013G111300.1.p locus=Potri.013G111300 ID=Potri.013G111300.1.v4.1 annot-version=v4.1 MRAFLNTVKLDPLRLFFSPSLLNRRKTNFVSLPSFSYPSKTLTRIQTPGVFYCKEMATVSSEAAARAVIEVKDKIELNEVEKQIFDRLVNTLRHFNLNTE LRVAGGWVRDKLLGKECCDIDIAIDNMLGSEFVDKVREYLLSTGEEAHGVGVIPRNPDQSKHLETARMRLLDLWIDFVNLRSEDYSENSRIPTMTFGTAK EDAYRRDLTINSLFYNINTSSVEDLTGRGIEDLKSGKIVTPLPPKDTFLDDPLRVLRAIRFGARFGFVLEEELKEAAACDDVKNALKAKISKERIGTEID LMISGNQPVKAMTYIADLTLFWVVFNLHPKVEPTVSEECQGLCVAYLDAAWNLIHLIGGSSFTGEQRRLCLYAALFLPLRNTIYKDEKGKKVPVVNYIFR DSLKQKASDPETVIKIHRSLEKFLTLIPLLTSNDDTQPAEVDMGMELFDVPITSKLRVATGFLLREVKEFWRVGLLISTMLYPSDTDSTQDFLEKKFELD RRKDLFKAAEDAIVNLGLERVWDLKPLVNGKDIMTVLQLKSGGPVVKEWQQKLLAWQFAHPAGTVEECLDWMKETHLKRAKME

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22660			Polynucleotide adenylyltransfe...		Potri.013G111300 [exp]	0	1
AT5G15940			NAD(P)-binding Rossmann-fold s...		Potri.001G453500 [exp]	1.00	0.8316
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Potri.018G103700 [exp]	10.95	0.7743
AT1G56190			Phosphoglycerate kinase family...		Potri.016G091800 [exp]	16.79	0.7424
AT1G24340		EMB260, EMB2421	EMBRYO DEFECTIVE 260, EMBRYO D...		Potri.008G178400 [exp]	18.97	0.7432
AT5G37930			Protein with RING/U-box and TR...		Potri.004G091800 [exp]	20.97	0.7473
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Potri.017G076132 [exp]	21.56	0.7168
AT3G55080			SET domain-containing protein ...		Potri.008G047400 [exp]	22.97	0.7228
AT1G68990		MGP3	male gametophyte defective 3 (...		Potri.010G136700 [exp]	28.37	0.7392
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Potri.001G153400 [exp]	31.14	0.6553
AT1G72990		BGAL17	beta-galactosidase 17 (.1.2)		Potri.003G037000 [exp]	31.17	0.6745

Compare expression of checked genes

Potri.013G111300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.