Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35620 532 / 0 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT1G21750 109 / 6e-26 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 105 / 1e-24 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT5G60640 92 / 8e-20 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT2G47470 81 / 9e-17 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT3G54960 82 / 1e-16 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT1G52260 79 / 2e-15 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT3G16110 76 / 2e-14 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) AT2G32920 74 / 3e-14 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G04980 72 / 3e-13 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G082400 [exp] 718 / 0 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.005G179000 [exp] 108 / 2e-25 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.002G082100 [exp] 107 / 5e-25 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.009G013600 [exp] 96 / 3e-21 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.002G198300 [exp] 86 / 3e-18 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G122800 [exp] 82 / 5e-17 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.008G040100 [exp] 82 / 1e-16 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.001G183500 [exp] 76 / 1e-14 AT3G16110 650 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Potri.014G160000 [exp] 76 / 1e-14 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022494 [exp] 569 / 0 AT1G35620 540 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Lus10016798 [exp] 566 / 0 AT1G35620 546 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Lus10042721 [exp] 108 / 5e-25 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10029681 [exp] 106 / 2e-24 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10018156 [exp] 105 / 2e-24 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10036337 [exp] 87 / 9e-19 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10010274 [exp] 86 / 5e-18 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10037403 [exp] 85 / 2e-17 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10035870 [exp] 83 / 6e-17 AT1G52260 632 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) Lus10015160 [exp] 79 / 1e-15 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin CL0172 [poplar] [flax] Thioredoxin PF13848 [poplar] [flax] Thioredoxin_6 Thioredoxin-like domain
Representative CDS sequence Show only first row Show all	>Potri.013G111400.1 pacid=42812085 polypeptide=Potri.013G111400.1.p locus=Potri.013G111400 ID=Potri.013G111400.1.v4.1 annot-version=v4.1 ATGAAGACGACGCGATCATCCTTAATCCTCATATTATCCATAATAATATCGGCAACAGAATCAACAAGAGCTGACAAAATAAATACAGTGTTAGAGCTAG ACGAATCGAATTTCGATTCTACTATTGCCGCCTACGACTATGTCTTCGTCGATTTCTACGCCCCTTGGTGCACCCATTGCAAGCGCCTCGCTCCCGAGTT AGATGTGGCTGCTCCAATTCTCGCTGAATTGAAGAAACCTATAGTCATAGCGAAAGTGAATGCCGACAAGTATACCCGTCTTGCTAGGAAACATGAAGTC GATGGATATCCGACCCTCAAGATCTATATGCATGGTGTTCCGACAGAATATTATGGACCAAGGAAAGCAGAATTACTCGTTCGTTTTCTGAGGAAATTTG TTGCTCCTGATGTTGTTGTCCTTAATTCCGACTCAGCTATAAGAGAGTTTGTTGAAGAAGCTGGGACACATTTTCCTATATTTATAGGTTTCGGTTTAAA TGAGACTTTGATATCAAATCTAGCCATAAAGTATAAGAAGAAGGCTTGGTTTTCTGTAGCAAGTGATTTCTCAGATGATGTAATGGTACAATATGATTTT GACAAGATTCCAACTGTGGTATCTATTCATCCAAGTTACGATGATCATAGCATCTTTTATGGGCCCTTTGAAGAGGAATTTTTGGAGGAATTCATAGAAC AAAATTTTCTTCCTTTGGCTGTGCCAATAAACTATGATACACTGAAGGTACTGAAAGATGATCAGAGGAAAATTGTCCTGACCATCTTAGAGGATGAGTC TGAAGAGAAATCACAAAAGTTGATCAAGACATTGAAGGCCGCTGCATCAGCAAATCGCAATTTGGTATTTGGTTATGTTGGGGTTAAACAATGGGCGGAA TTTGCAGAGACATTTGGTGCCAAGGGGACAAAACTACCAAAAATGATTGTTTGGGATGGAGGCGAGGAGTATCTTTCAGTTATTGGCTCAGAAAGCATTG AAGAGGAGGACCAGGGGTCTCAAATCTCACAATTCCTTGCAGGATATAGAGAAGGGAAAACAGAGCGGAATAGAATTAGTGGTCCATCACTGATGGGCTA TCTCAATTCACTGATTGGAGTTAGAACTGTGTACATAATTGTGTTTTTGGTTGCAATGCTAATACTGATCCGACATATTAGCAAAGAGGAACCTCTAACG GTTGGTACCGGAGACCAAGTTGAACACGCGACAAGCTCTGAAGCTGAAAGCTCAGACTATAGACCCGGGGATAAGCAAGACTAG
AA sequence Show only first row Show all	>Potri.013G111400.1 pacid=42812085 polypeptide=Potri.013G111400.1.p locus=Potri.013G111400 ID=Potri.013G111400.1.v4.1 annot-version=v4.1 MKTTRSSLILILSIIISATESTRADKINTVLELDESNFDSTIAAYDYVFVDFYAPWCTHCKRLAPELDVAAPILAELKKPIVIAKVNADKYTRLARKHEV DGYPTLKIYMHGVPTEYYGPRKAELLVRFLRKFVAPDVVVLNSDSAIREFVEEAGTHFPIFIGFGLNETLISNLAIKYKKKAWFSVASDFSDDVMVQYDF DKIPTVVSIHPSYDDHSIFYGPFEEEFLEEFIEQNFLPLAVPINYDTLKVLKDDQRKIVLTILEDESEEKSQKLIKTLKAAASANRNLVFGYVGVKQWAE FAETFGAKGTKLPKMIVWDGGEEYLSVIGSESIEEEDQGSQISQFLAGYREGKTERNRISGPSLMGYLNSLIGVRTVYIIVFLVAMLILIRHISKEEPLT VGTGDQVEHATSSEAESSDYRPGDKQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.013G111400 [exp]	0	1
AT5G22120			unknown protein		Potri.001G216500 [exp]	11.44	0.8260
AT5G59410			Rab5-interacting family protei...		Potri.001G241500 [exp]	14.14	0.8873
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Potri.002G077400 [exp]	14.28	0.8622
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Potri.002G038900 [exp]	16.00	0.8640	5,Pt-PT1.3
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.003G125400 [exp]	16.24	0.8820
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Potri.015G131100 [exp]	17.02	0.8228
AT2G02050			NADH-ubiquinone oxidoreductase...		Potri.010G099900 [exp]	25.69	0.8538
AT1G64650			Major facilitator superfamily ...		Potri.003G145600 [exp]	26.32	0.8822
AT1G77690		LAX3	like AUX1 3 (.1)		Potri.002G087000 [exp]	29.81	0.8743	PtrAUX8
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G031000 [exp]	33.13	0.8615	RPT1.3

Compare expression of checked genes

Potri.013G111400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.