Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71980 426 / 1e-146 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G35630 308 / 2e-102 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT4G09560 308 / 1e-100 NHL22 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G22670 297 / 1e-96 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT5G66160 187 / 4e-56 JR700, ATRMR1 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) AT1G35625 180 / 2e-54 RING/U-box superfamily protein (.1) AT3G19910 69 / 1e-12 RING/U-box superfamily protein (.1) AT2G17450 65 / 4e-12 RHA3A RING-H2 finger A3A (.1) AT2G17730 64 / 3e-11 NIP2 NEP-interacting protein 2 (.1.2) AT3G55530 63 / 5e-11 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G082500 [exp] 581 / 0 AT1G71980 449 / 3e-156 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.005G111100 [exp] 196 / 3e-59 AT5G66160 264 / 3e-88 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Potri.003G176500 [exp] 70 / 2e-12 AT1G04790 264 / 2e-78 RING/U-box superfamily protein (.1) Potri.006G190500 [exp] 69 / 2e-12 AT5G45290 150 / 3e-39 RING/U-box superfamily protein (.1.2) Potri.001G435800 [exp] 65 / 1e-11 AT3G20395 153 / 4e-46 RING/U-box superfamily protein (.1) Potri.005G113200 [exp] 64 / 1e-11 AT2G17450 66 / 2e-13 RING-H2 finger A3A (.1) Potri.003G106600 [exp] 67 / 2e-11 AT5G45290 320 / 4e-102 RING/U-box superfamily protein (.1.2) Potri.016G067900 [exp] 62 / 2e-11 AT2G35910 129 / 7e-38 RING/U-box superfamily protein (.1) Potri.014G053500 [exp] 66 / 3e-11 AT5G45290 134 / 4e-34 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014823 [exp] 470 / 1e-161 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10016936 [exp] 453 / 1e-157 AT1G71980 483 / 1e-169 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10006074 [exp] 451 / 1e-156 AT1G71980 466 / 2e-162 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10009438 [exp] 324 / 9e-107 AT1G71980 329 / 1e-108 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10041896 [exp] 200 / 2e-60 AT5G66160 283 / 3e-94 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Lus10028443 [exp] 198 / 9e-60 AT5G66160 286 / 6e-96 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Lus10000053 [exp] 122 / 3e-33 AT1G71980 137 / 3e-39 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10022743 [exp] 69 / 2e-13 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10001683 [exp] 66 / 2e-11 AT5G45290 155 / 4e-41 RING/U-box superfamily protein (.1.2) Lus10000513 [exp] 64 / 6e-11 AT3G55530 389 / 7e-138 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.013G111500.2 pacid=42812373 polypeptide=Potri.013G111500.2.p locus=Potri.013G111500 ID=Potri.013G111500.2.v4.1 annot-version=v4.1 ATGAAGGGTATTGTAGTTTTATTGTTGTCTCTGTTGAGTTGCTGTTTGGTGGCGTCGGCTAATGTTGTTTTGATTGGAAATAATGTCACCATGGCTTTCA ATGATATCGAAGCTAATTTCGCTCCGGCAATAAAGGGCTCAGGTGAATGTGGGGTATTGTCTTTGGCGGAGCCTATTGATGCATGCACGGATTTGACTAA TAAAGCTGAAAAGGGTTTGAATAGTAGCTCTCCATATGTGTTGATTATTAGAGGAGGGTGTAGCTTTGAGCATAAAGTTAGAAGAGCACAAAAGGCAGGG TTCAAAGCTGCTATTGTCTTTGACAACGAAGAAGGAGTCTTGGTTGCAATGGCAGGAAACTCAGTTGGTGTAAAAATACATGCCGTCTTTGTTTCTAAAA AATCAGGCGAAACACTTACGAAGTATGCTGGGTTGACTGGCTTGGAGCTGTGGTTAATCCCAAGCTTTGAAAATTCAGCATGGTCTATTATGGCAATCTC TTTTATTTCTCTTCTTGCGATGTCTGCAGTATTGGCAACTTGTTTCTTCATCCGCAGACATCGCATAAGAAGAGAGCACTCTCACTCATCTCGTGTTCGG GAATTCCATGGGATGAGCAGCCGCCTAGTGAAAGCAATGCCTAGCCTCACATTTACGTCCGTTCTAGAGGATAATTGTACTTCTACTACATGTGCCATAT GCCTTGAAGATTATACTGTTGGAGAAAAACTCAGGATTCTGCCATGTCGACACAAATTCCATGCTTTCTGTGTGGATTCTTGGCTAACTACATGGAGAAC CTTTTGTCCAGTATGCAAGCGTGATGCAAGAACTAGCACAGGTGATCCACCAGCATCAGAATCCACACCATTGCTTTCTTCCAACCCATCCTCTTTCGCT TCATCATCAATGCTTTCATCTTTTAGATCTGGAACATCAACTGCCATACAAATTGCCTCATCAAGGACCCCTTCAGTTTCTCACATTTCCTCTCTTTCAA GCACTCCTTATGTCCAACAGCCTCTTAGATCCTACCGGCACTCGACTTCCATAAGTATAAGTCACAGCTCAGCTGATCTTAGGCACATGTCTTCCCAAAG ATCCCTTACTTCCCATTTGGTTTCACCCCATTCTTTGGGCTACCCATCAATATCACCCTTGAATACCAGATACATGTCTGCATATATTCCTAGCCCAAGC AATGCCTCCCCAAGTCTGGTTAGCTCTAGTCATCAACCACGCCCATTGTATTGCAGTGAGTCGGTTAGCTCTAGTCATCAGCCACGCCCATTGCATTGCA GTGAGTCTGCTGCAAGTTTCTCCTCATTTGCCTCTGCCCAGTCTCTTCCAGGTTGCTAA
AA sequence Show only first row Show all	>Potri.013G111500.2 pacid=42812373 polypeptide=Potri.013G111500.2.p locus=Potri.013G111500 ID=Potri.013G111500.2.v4.1 annot-version=v4.1 MKGIVVLLLSLLSCCLVASANVVLIGNNVTMAFNDIEANFAPAIKGSGECGVLSLAEPIDACTDLTNKAEKGLNSSSPYVLIIRGGCSFEHKVRRAQKAG FKAAIVFDNEEGVLVAMAGNSVGVKIHAVFVSKKSGETLTKYAGLTGLELWLIPSFENSAWSIMAISFISLLAMSAVLATCFFIRRHRIRREHSHSSRVR EFHGMSSRLVKAMPSLTFTSVLEDNCTSTTCAICLEDYTVGEKLRILPCRHKFHAFCVDSWLTTWRTFCPVCKRDARTSTGDPPASESTPLLSSNPSSFA SSSMLSSFRSGTSTAIQIASSRTPSVSHISSLSSTPYVQQPLRSYRHSTSISISHSSADLRHMSSQRSLTSHLVSPHSLGYPSISPLNTRYMSAYIPSPS NASPSLVSSSHQPRPLYCSESVSSSHQPRPLHCSESAASFSSFASAQSLPGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71980			Protease-associated (PA) RING/...		Potri.013G111500 [exp]	0	1
AT1G63840			RING/U-box superfamily protein...		Potri.003G130900 [exp]	1.41	0.8234
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Potri.014G120100 [exp]	4.47	0.7728	SDG913,EMB173.1
AT5G62865			unknown protein		Potri.015G073800 [exp]	4.89	0.8475
AT4G06744			Leucine-rich repeat (LRR) fami...		Potri.009G098700 [exp]	5.29	0.7870
AT1G05710	bHLH	bHLH153	basic helix-loop-helix (bHLH) ...		Potri.013G126800 [exp]	6.92	0.7976
AT3G07300			NagB/RpiA/CoA transferase-like...		Potri.001G026100 [exp]	7.34	0.7768
AT3G10910			RING/U-box superfamily protein...		Potri.019G057700 [exp]	8.06	0.7893
AT2G26510		PDE135	pigment defective embryo 135, ...		Potri.014G035800 [exp]	9.79	0.7571	PDE135.1
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Potri.005G126400 [exp]	11.22	0.7415
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.013G041000 [exp]	12.00	0.7878

Compare expression of checked genes

Potri.013G111500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.