Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CDPK2.4,CPK4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35670 816 / 0 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT4G09570 813 / 0 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT5G23580 707 / 0 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1) AT4G35310 687 / 0 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT2G17290 684 / 0 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT3G10660 676 / 0 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT5G04870 674 / 0 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT4G38230 669 / 0 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT2G38910 652 / 0 CPK20 calcium-dependent protein kinase 20 (.1) AT5G12180 596 / 0 CPK17 calcium-dependent protein kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G083200 [exp] 925 / 0 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1) Potri.T012800 [exp] 790 / 0 AT1G35670 795 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.009G168600 [exp] 702 / 0 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.004G207300 [exp] 700 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.008G014700 [exp] 694 / 0 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.010G244800 [exp] 690 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.016G066700 [exp] 683 / 0 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.006G199400 [exp] 672 / 0 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.006G200600 [exp] 670 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009427 [exp] 795 / 0 AT4G09570 792 / 0.0 calcium-dependent protein kinase 4 (.1) Lus10017911 [exp] 780 / 0 AT1G35670 793 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10014820 [exp] 774 / 0 AT1G35670 777 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10039623 [exp] 752 / 0 AT1G35670 793 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10029547 [exp] 747 / 0 AT1G35670 790 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10022986 [exp] 706 / 0 AT4G35310 950 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10001384 [exp] 703 / 0 AT4G35310 949 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10026559 [exp] 695 / 0 AT2G17290 952 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Lus10013842 [exp] 690 / 0 AT2G17290 948 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Lus10008958 [exp] 690 / 0 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.013G112500.6 pacid=42811455 polypeptide=Potri.013G112500.6.p locus=Potri.013G112500 ID=Potri.013G112500.6.v4.1 annot-version=v4.1 ATGAATGAAGAAACCACCAGACCACCACCACCGTCAACAGCAGAACCAGCACCAGCACCAAGAGCAAGACCAACAATAAGAAAGCCCACAACCTCAGTCT TACCACACCAAACCCCAAGACTTAGAGACCATTATTTGTTAGGCAAGAAACTAGGGCAGGGTCAATTTGGAACCACATATCTATGTACCCATAAAGCAAG CAACAATCTTTATGCCTGCAAATCAATTCCAAAGAGGAAGCTTTTATGTAAAGAAGACTATGAGGATGTTTATAGAGAGATCCAGATCATGCACCATTTA TCAGGGCAACCAAATGTGGTGCAAATTAAGGATACTTATGAGGATCCAATGTTTGTACATTTGGTCATGGAGTTATGTGAAGGTGGTGAGCTTTTTGATA GGATCGTGGAAAGGGGTCAGTATAGTGAGAAAGAGGCTGCTAACTTGATCAAAAATATAATTGGGGTGGTTGAGTATTGTCATTCTTTGGGGGTTATGCA TAGAGATCTTAAGCCTGAGAACTTCTTGTTTGATAAACCTGGTGATGATGCCAAGCTCAAGACTACAGATTTCGGCCTCTCTGTCTTTTACAAGCCAGGA CAGTATTTTTATGATGTAGTTGGGAGTCCATATTATGTTGCACCAGAGGTTTTGCTAAAGTATTATGGACCTCAAGCAGATGTCTGGAGTGCGGGTGTTA TCCTTTACATCCTATTAAGCGGGGTTCCACCTTTTTGGGCAGAAACAGAATCAGGAATCTTCAGACAGATTTTACAAGGAAAACTAGATTTAGAATCTGA TCCGTGGCCAAATATCTCAGAAAGTGCAAAAGATTTGGTCAGAAAGATGCTTGAGAGGGATCCGAGGCAAAGGATTACTGCTCATGAAGTCTTGTGTAAC CCATGGATTGTAGATGACAGGGTTGCTCCAGACAAACCTCTTGATTCTGCAGTATTGTCACGTCTGAAGCAATTCTCGGCAATGAATAAACTTAAAAAGA TGGCTTTGCGTGTCATAGCAGAAAGACTTTCTGAAGAAGAAATTGGTGGTTTGAAAGAGTTGTTTAAAATGATTGACACAGACAATAGTGGGACAATAAC ATTTGAAGAACTTAAACATGGTTTGAAGAGAGTAGGTTCTCAGATGACAGAAGCTGAAATCAAGACTCTAATGGATGCGGCTGATATAGACAATAGTGGA ACAATAGACTATGGTGAATTTCTTGCTGCTACTTTGCACTTGAATAAGATGGATAGAGAGGACAATTTGGTTGCAGCTTTCTCCTACTTTGACAAAGATG GTAGTGGTTACATCACCATCGATGAGCTTCAACAGGCTTGCAAAGATTTTGGTCTTGGTGATGTTCATCTGGATGAGACCATCAAAGAAATTGATCTAGA CAATGATGGGCGAATAGATTATGGGGAGTTTGCTGCAATGATGAGAAAGGGTGATGGAGGAGTTGGGAGGACAAGAACCATGAGAAACAATCTGAACTTC AATTTAGCCGATGCCTTTGGGGTTGATGCCTTGGGGATGAAAGATGCAACCTCAGATGCTGATTGA
AA sequence Show only first row Show all	>Potri.013G112500.6 pacid=42811455 polypeptide=Potri.013G112500.6.p locus=Potri.013G112500 ID=Potri.013G112500.6.v4.1 annot-version=v4.1 MNEETTRPPPPSTAEPAPAPRARPTIRKPTTSVLPHQTPRLRDHYLLGKKLGQGQFGTTYLCTHKASNNLYACKSIPKRKLLCKEDYEDVYREIQIMHHL SGQPNVVQIKDTYEDPMFVHLVMELCEGGELFDRIVERGQYSEKEAANLIKNIIGVVEYCHSLGVMHRDLKPENFLFDKPGDDAKLKTTDFGLSVFYKPG QYFYDVVGSPYYVAPEVLLKYYGPQADVWSAGVILYILLSGVPPFWAETESGIFRQILQGKLDLESDPWPNISESAKDLVRKMLERDPRQRITAHEVLCN PWIVDDRVAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKHGLKRVGSQMTEAEIKTLMDAADIDNSG TIDYGEFLAATLHLNKMDREDNLVAAFSYFDKDGSGYITIDELQQACKDFGLGDVHLDETIKEIDLDNDGRIDYGEFAAMMRKGDGGVGRTRTMRNNLNF NLADAFGVDALGMKDATSDAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Potri.013G112500 [exp]	0	1	Pt-CDPK2.4,CPK4
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Potri.015G099000 [exp]	15.16	0.7085
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Potri.001G154300 [exp]	17.32	0.6675
AT3G50160			Plant protein of unknown funct...		Potri.001G333000 [exp]	19.02	0.7408
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Potri.003G202300 [exp]	19.44	0.6970
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Potri.003G030900 [exp]	21.28	0.7290	Pt-NHO1.1
AT2G11890			adenylate cyclases (.1.2)		Potri.018G121300 [exp]	26.19	0.7064
					Potri.007G119351 [exp]	34.00	0.6919
AT4G35240			Protein of unknown function (D...		Potri.004G182900 [exp]	34.35	0.6750
AT5G22920			CHY-type/CTCHY-type/RING-type ...		Potri.009G005700 [exp]	34.46	0.7027
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Potri.014G091500 [exp]	37.41	0.6964

Compare expression of checked genes

Potri.013G112500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.