Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35680 157 / 5e-48 RPL21C chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) AT4G30930 70 / 4e-14 WRKY32, NFD1 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G083400 [exp] 286 / 9e-99 AT1G35680 173 / 3e-54 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) Potri.015G095700 [exp] 81 / 6e-18 AT4G30930 181 / 6e-56 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017912 [exp] 178 / 5e-56 AT1G35680 213 / 4e-70 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) Lus10014819 [exp] 176 / 5e-55 AT1G35680 220 / 1e-72 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) Lus10015441 [exp] 69 / 1e-13 AT4G30930 217 / 7e-70 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1) Lus10011178 [exp] 68 / 2e-13 AT4G30930 218 / 2e-70 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00829 [poplar] [flax] Ribosomal_L21p Ribosomal prokaryotic L21 protein
Representative CDS sequence Show only first row Show all	>Potri.013G112900.1 pacid=42812685 polypeptide=Potri.013G112900.1.p locus=Potri.013G112900 ID=Potri.013G112900.1.v4.1 annot-version=v4.1 ATGGCTACTTCTTCCTCCACAACACTTGTAGCTCTCTGTTCTTCTTTAACCACTCAATGCAAAATCTCCAATGCACAAAACCCACCTCTCTCTAAATCCC TTTGCCTCTCCAAACCCAATTCTGGGTCTTTCTCAAAGACCACTCAGAATTTATCCTCCTCTTCTCTTATTTTCTCTAAAAGACCCACATTTTTTGCCAA TCCTCCCAAGTTTTCTGAATCTGAAGCTCTTGTTGTTGAAGCAGAGCCTGAAGTACCCGTGTCAGAGGCTAACCCTGAGCCTGCTGCCACGCAGATGGTT GAGGTTGCTAAGGAAGAGCCACCCAAGCGTGAGGAGATTTTTGCTGTTGTTATGGTAGGATCTCGCCAGTACATTGTTATCCCGGGGCGATGGCTCTATG TGCAGAGGCTAAAAGGTGCTAATGTCAATGATAAGGTAAATCTGAATAAGGTGTTACTTGTGGGAACAAGAACAAGTGCCTATATTGGAAAACCAGTGGT GACTAATGCTACTGTTCATGCTGTAGTTGAAGAGCAGGGATTAGATGCTAAAAAGATTGTCTTCAAATATAAGAAGAAGAAAAACTACAGGAGAAATATC GGTCACCGACAGCCAAATACTCGGATAAGGATAACAGGTATCACTGGCTATCAAGACTACCCTGTATCTACTCTTGATTCATAG
AA sequence Show only first row Show all	>Potri.013G112900.1 pacid=42812685 polypeptide=Potri.013G112900.1.p locus=Potri.013G112900 ID=Potri.013G112900.1.v4.1 annot-version=v4.1 MATSSSTTLVALCSSLTTQCKISNAQNPPLSKSLCLSKPNSGSFSKTTQNLSSSSLIFSKRPTFFANPPKFSESEALVVEAEPEVPVSEANPEPAATQMV EVAKEEPPKREEIFAVVMVGSRQYIVIPGRWLYVQRLKGANVNDKVNLNKVLLVGTRTSAYIGKPVVTNATVHAVVEEQGLDAKKIVFKYKKKKNYRRNI GHRQPNTRIRITGITGYQDYPVSTLDS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Potri.013G112900 [exp]	0	1
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Potri.004G140500 [exp]	2.82	0.9862
AT3G13120			Ribosomal protein S10p/S20e fa...		Potri.001G365600 [exp]	3.74	0.9811
AT3G61080			Protein kinase superfamily pro...		Potri.002G153100 [exp]	6.48	0.9775
AT3G48420			Haloacid dehalogenase-like hyd...		Potri.015G088500 [exp]	6.70	0.9777
AT3G13120			Ribosomal protein S10p/S20e fa...		Potri.011G092800 [exp]	6.92	0.9810
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Potri.009G065900 [exp]	8.48	0.9807
AT1G65230			Uncharacterized conserved prot...		Potri.013G085300 [exp]	11.22	0.9776
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Potri.006G221100 [exp]	11.40	0.9760
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Potri.001G384600 [exp]	12.64	0.9773
AT4G01150			unknown protein		Potri.002G166800 [exp]	13.26	0.9727	CAM2.2

Compare expression of checked genes

Potri.013G112900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.