Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09580 454 / 4e-163 SNARE associated Golgi protein family (.1) AT1G71940 452 / 9e-163 SNARE associated Golgi protein family (.1.2) AT4G17790 333 / 1e-115 SNARE associated Golgi protein family (.1) AT1G03260 54 / 2e-08 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G083500 [exp] 539 / 0 AT1G71940 460 / 1e-165 SNARE associated Golgi protein family (.1.2) Potri.003G094000 [exp] 339 / 2e-118 AT4G17790 378 / 8e-134 SNARE associated Golgi protein family (.1) Potri.001G140200 [exp] 333 / 7e-116 AT4G17790 379 / 2e-134 SNARE associated Golgi protein family (.1) Potri.010G030800 [exp] 42 / 0.0002 AT5G19070 321 / 7e-111 SNARE associated Golgi protein family (.1) Potri.008G202600 [exp] 42 / 0.0002 AT5G19070 338 / 1e-117 SNARE associated Golgi protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017913 [exp] 479 / 5e-173 AT4G09580 442 / 2e-158 SNARE associated Golgi protein family (.1) Lus10014818 [exp] 406 / 9e-145 AT1G71940 374 / 2e-132 SNARE associated Golgi protein family (.1.2) Lus10004564 [exp] 334 / 5e-116 AT4G17790 388 / 1e-137 SNARE associated Golgi protein family (.1) Lus10000905 [exp] 332 / 3e-115 AT4G17790 387 / 2e-137 SNARE associated Golgi protein family (.1) Lus10034028 [exp] 47 / 5e-06 AT5G19070 363 / 3e-127 SNARE associated Golgi protein family (.1) Lus10004421 [exp] 47 / 1e-05 AT5G19070 361 / 2e-126 SNARE associated Golgi protein family (.1) Lus10028016 [exp] 46 / 1e-05 AT1G03260 328 / 2e-113 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 40 / 0.0008 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [poplar] [flax] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Potri.013G113000.1 pacid=42812667 polypeptide=Potri.013G113000.1.p locus=Potri.013G113000 ID=Potri.013G113000.1.v4.1 annot-version=v4.1 ATGGCATCAGCAAGGAATCTAGTAGTTGAAATAGCAGCAGGAAACGAGAGAGGGAAGGTGTTAACGATGAGAGATGAAGAGAAAGCTAAAGAGGACGATT CACCCTCTGCTAAAAGGTCGAAATTTGAGAGATTTCCATTGACAAGATGGGAATTAGCTGCTGCTCTTGGGGTCTTTTTAGTCTTTTCAACTGGTTTGTT TTGTATCTACTTGACAATGCCTGCTGCTGATTATGGCAAGCTCAAGTTGCCTCGTTCTATTTCAGATCTTCGCTTGCTCAAAGACAATCTTGCAACATAT GTGAGTGAATATCCAGCACAGTTCATTCTGGGCTACTGCTCTACTTATATCTTCATGCAGACCTTCATGATTCCTGGAACAATTTTCATGTCATTACTAG CTGGAGCTCTTTTTGGCATTGTTAGGGGACTATTTTTAGTTGTCTTCAATGCCACAGCTGGAGCGTCTTCCTGCTTTTTCTTGTCTAAGTTGATTGGCAG GCCTCTAGTTAATTGGTTGTGGCCTGAAAAAATGAGATTTTTTCAGTCAGAGATTGCTAAGCGAAAGGAAAAACTGCTGAATTACATGCTCTTCTTGAGA GTAACTCCAACGTTGCCCAATCTTTTTATCAATTTGGCATCTCCAATAGTGGACATACCATTTCATATTTTCTTTTTGGCTACTTTACTAGGTCTTATTC CTGCTTCCTATATCACTGTCAAGGCTGGCCTTGCTCTAGGGGATCTCAAGTCAGTTAAGGATCTATATGATTTCAAAACTTTGTCTGTGCTCTTCCTTAT TGGATCCATTTCCATATTTCCTACCCTTTTAAAGAGAAAGCGGATATATGAGTGA
AA sequence Show only first row Show all	>Potri.013G113000.1 pacid=42812667 polypeptide=Potri.013G113000.1.p locus=Potri.013G113000 ID=Potri.013G113000.1.v4.1 annot-version=v4.1 MASARNLVVEIAAGNERGKVLTMRDEEKAKEDDSPSAKRSKFERFPLTRWELAAALGVFLVFSTGLFCIYLTMPAADYGKLKLPRSISDLRLLKDNLATY VSEYPAQFILGYCSTYIFMQTFMIPGTIFMSLLAGALFGIVRGLFLVVFNATAGASSCFFLSKLIGRPLVNWLWPEKMRFFQSEIAKRKEKLLNYMLFLR VTPTLPNLFINLASPIVDIPFHIFFLATLLGLIPASYITVKAGLALGDLKSVKDLYDFKTLSVLFLIGSISIFPTLLKRKRIYE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09580			SNARE associated Golgi protein...		Potri.013G113000 [exp]	0	1
AT3G06240			F-box family protein (.1)		Potri.001G318300 [exp]	3.74	0.6520
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Potri.002G154500 [exp]	5.83	0.6719	EMB78.2
AT1G72810			Pyridoxal-5'-phosphate-depende...		Potri.001G199100 [exp]	9.16	0.6142
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Potri.009G168200 [exp]	11.31	0.6038
AT4G29960			unknown protein		Potri.006G075900 [exp]	12.12	0.5866
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Potri.015G060800 [exp]	12.48	0.5489
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.004G118900 [exp]	19.74	0.5962
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.009G166000 [exp]	22.36	0.5355
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Potri.016G098400 [exp]	24.81	0.5008	Pt-ATB'.2
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Potri.010G198000 [exp]	26.66	0.5726

Compare expression of checked genes

Potri.013G113000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.