Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09620 244 / 1e-82 Mitochondrial transcription termination factor family protein (.1) AT4G02990 44 / 3e-05 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT2G44020 41 / 0.0003 Mitochondrial transcription termination factor family protein (.1) AT2G21710 41 / 0.0005 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038500 [exp] 42 / 0.0002 AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 41 / 0.0003 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.013G116700 [exp] 41 / 0.0003 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.012G046700 [exp] 41 / 0.0004 AT5G07900 241 / 5e-76 Mitochondrial transcription termination factor family protein (.1) Potri.009G116200 [exp] 41 / 0.0005 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.014G137400 [exp] 40 / 0.0006 AT4G02990 669 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Potri.018G051600 [exp] 40 / 0.001 AT1G74120 501 / 2e-176 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028701 [exp] 258 / 4e-88 AT4G09620 226 / 1e-75 Mitochondrial transcription termination factor family protein (.1) Lus10009420 [exp] 253 / 4e-86 AT4G09620 214 / 6e-71 Mitochondrial transcription termination factor family protein (.1) Lus10004614 [exp] 44 / 7e-05 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10022321 [exp] 43 / 8e-05 AT4G02990 540 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10014877 [exp] 43 / 0.0001 AT4G02990 665 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10042322 [exp] 41 / 0.0005 AT2G21710 720 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.013G113500.1 pacid=42812123 polypeptide=Potri.013G113500.1.p locus=Potri.013G113500 ID=Potri.013G113500.1.v4.1 annot-version=v4.1 ATGCTAGGAAGATCACTGGCTTCCCCTCTCTTGACATTTGATTCTGCAGCACGCTCAAGCTGTGTTACTCCTGATCTTGTTACAGCTGCTCCTAATGCTG CTTGTCTGAACGTGAACTCCTTAGCTCTTCCATCAAATGTAACCCGAGGATACTGTACCTCCCATTTTTCTCCTAGGAAGTGGGCAATTCAATCTACTGC ACAGGCTGACAACACAACTTTTAGTAATGAAGACAGGAAGACATGGGAAGCATGCAGAGAAGCTCTGTCTGCATTTAATTTCAATGCTGAGGAGAAAGAC AAGATACTTGGAAAAGCATTTGGTCACGTCCATTCTCCTTACTGGGGTGAACAACGAAAACTAGAAGTCCCCAAATTTGAAATTGTTTGTGAAACGTTGG ATTATCTGAGGAGCCTTGGTCTTTCAGAAGATGACCTCTTTAAGTTGCTCAAAAAGTTCCCTGAAGTCCTTGGTTGTAGCCTTGAACAAGAATTGAAAAC TAATGTGAAGATCCTGGAGAAAGATTGGGGAATTAAAGGAAAATCCCTGCAAAAGCTTCTTCTTCGAAACCCAAAAGCTTTGGGATATAATGTTGATTGC AAGGGAGATTGTATCGCACAATGCACGAGGTGCTGGGCGCGGTTTTAG
AA sequence Show only first row Show all	>Potri.013G113500.1 pacid=42812123 polypeptide=Potri.013G113500.1.p locus=Potri.013G113500 ID=Potri.013G113500.1.v4.1 annot-version=v4.1 MLGRSLASPLLTFDSAARSSCVTPDLVTAAPNAACLNVNSLALPSNVTRGYCTSHFSPRKWAIQSTAQADNTTFSNEDRKTWEACREALSAFNFNAEEKD KILGKAFGHVHSPYWGEQRKLEVPKFEIVCETLDYLRSLGLSEDDLFKLLKKFPEVLGCSLEQELKTNVKILEKDWGIKGKSLQKLLLRNPKALGYNVDC KGDCIAQCTRCWARF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09620			Mitochondrial transcription te...		Potri.013G113500 [exp]	0	1
AT5G43050		NPQ6	NONPHOTOCHEMICAL QUENCHING 6, ...		Potri.012G134700 [exp]	3.46	0.9509
AT4G29070			Phospholipase A2 family protei...		Potri.001G275300 [exp]	8.36	0.9470
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Potri.017G062800 [exp]	12.16	0.9512	SK1
AT2G39000			Acyl-CoA N-acyltransferases (N...		Potri.008G039300 [exp]	15.87	0.9448
AT4G21445			unknown protein		Potri.004G033400 [exp]	17.66	0.9501
AT5G57040			Lactoylglutathione lyase / gly...		Potri.018G056200 [exp]	19.18	0.9491
AT2G20920			Protein of unknown function (D...		Potri.004G177300 [exp]	21.23	0.9450
AT1G68660			Ribosomal protein L12/ ATP-dep...		Potri.008G117800 [exp]	28.12	0.9224
AT1G59960			NAD(P)-linked oxidoreductase s...		Potri.005G097000 [exp]	28.14	0.9464
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Potri.004G120300 [exp]	29.41	0.9490

Compare expression of checked genes

Potri.013G113500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.