Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77855 44 / 0.0001 unknown protein AT5G66675 41 / 0.0009 Protein of unknown function (DUF677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G084400 [exp] 489 / 2e-176 AT1G77855 47 / 5e-06 unknown protein Potri.002G090300 [exp] 47 / 8e-06 AT1G22030 360 / 2e-124 unknown protein Potri.005G170700 [exp] 46 / 2e-05 AT1G22030 358 / 9e-124 unknown protein Potri.T125304 [exp] 43 / 0.0002 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.009G112430 [exp] 43 / 0.0002 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.007G031200 [exp] 43 / 0.0002 AT2G18630 387 / 3e-133 Protein of unknown function (DUF677) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040334 [exp] 46 / 2e-05 AT2G18630 429 / 4e-150 Protein of unknown function (DUF677) (.1) Lus10023459 [exp] 46 / 2e-05 AT2G18630 419 / 9e-146 Protein of unknown function (DUF677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF03087 [poplar] [flax] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.013G113800.1 pacid=42812276 polypeptide=Potri.013G113800.1.p locus=Potri.013G113800 ID=Potri.013G113800.1.v4.1 annot-version=v4.1 ATGATGAAAAGGGTACTGTATCTTACATGTTTTTCTCCTTTTTTTCTCAGAGAAAAACCATCTTCTATCCACATTGATGAAGCAATTAACTCCTTTTCCT CTCTTCTTCAAGATATCAAGAACCTAGAATCCTCATTAACCAAAAACTCCTTATCCCTTCGATGGTGTTTAGAAGCCACAAATCTCCTCAGGAAGATGCA CTTTCAGTTTCTTGATATATTTCAGGAGTCTGAGGAACCCATGTTCTGGGATGGGGGGAACTATACGGATGAGTACATGGAAGATTCTTTACATATCCTG GATTTTTGTAACGTTCTGCGATCAGCCATTTCTACGATGGACAGGTACCGTTTAATAGTTGATGTTGCTGTTAAAAGATTTTCTGATGAAGGGTATTCAG GTTCTGCCATGAATATGACTGAAATTGAGAAATTAGAAAGAGAATGGCTGAAGCTATATGGTATTGAGAACTGGAAAAATGTGAATCTATACAAGACAAG AAGACCGAAAACAAAGACCAAGGATAATAGATTATGTGCAGCATATGTTGTAAGAAGAACCATGAATACTGTCTGTTTGCTCTTGTTTTGTGCAATATTC TATCCAGTTTCAATAGAACTGGATGAGGAGGTTTATACAGATTTTCCTCAACTGAAGCTATTCTCATCTTCACTGAGGAAGCTTGTTTGTTGCTTCTTCG AGGAGCGACAAGGTGTCAAGGATAACTCAAGGCCAGTTTTAGTCGAGACTAAAATGGTAGAGAGTGCAGTTGAGGAATTTAAAGTTCAGATTCTGAATGG TGGCGTGCCTCTGAATAAAGAGAAGTTGAAAAAAACCATTGATTCACTGCAGAATAGTTCCCTGGCTATGAAGGAAGGCCTCGGAATATTTGATTCTGTT GTTAATGAGCTGTTTCAAGAGGTAGTGAAAGGAAGGAATATGATTCTAGGTTTGGTTGCTTCAAGCTAG
AA sequence Show only first row Show all	>Potri.013G113800.1 pacid=42812276 polypeptide=Potri.013G113800.1.p locus=Potri.013G113800 ID=Potri.013G113800.1.v4.1 annot-version=v4.1 MMKRVLYLTCFSPFFLREKPSSIHIDEAINSFSSLLQDIKNLESSLTKNSLSLRWCLEATNLLRKMHFQFLDIFQESEEPMFWDGGNYTDEYMEDSLHIL DFCNVLRSAISTMDRYRLIVDVAVKRFSDEGYSGSAMNMTEIEKLEREWLKLYGIENWKNVNLYKTRRPKTKTKDNRLCAAYVVRRTMNTVCLLLFCAIF YPVSIELDEEVYTDFPQLKLFSSSLRKLVCCFFEERQGVKDNSRPVLVETKMVESAVEEFKVQILNGGVPLNKEKLKKTIDSLQNSSLAMKEGLGIFDSV VNELFQEVVKGRNMILGLVASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.013G113800 [exp]	0	1
AT5G35090			unknown protein		Potri.018G114401 [exp]	3.46	0.8427
					Potri.007G005400 [exp]	6.70	0.8156
					Potri.017G050200 [exp]	10.00	0.7814
AT3G27030			unknown protein		Potri.015G098200 [exp]	11.31	0.8333
AT1G73040			Mannose-binding lectin superfa...		Potri.012G140001 [exp]	13.19	0.8151
AT3G58720			RING/U-box superfamily protein...		Potri.014G139400 [exp]	13.56	0.8206
					Potri.004G226200 [exp]	14.17	0.8303
AT1G10380			Putative membrane lipoprotein ...		Potri.010G040500 [exp]	15.19	0.8148
					Potri.006G059400 [exp]	17.14	0.7980
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.009G110500 [exp]	17.88	0.8136

Compare expression of checked genes

Potri.013G113800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.