Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10330 612 / 0 ATHPA1, HPA1, HISN6A, EMB2196 HISTIDINE BIOSYNTHESIS 6A, EMBRYO DEFECTIVE 2196, histidinol phosphate aminotransferase 1 (.1.2.3) AT1G71920 612 / 0 HISN6B HISTIDINE BIOSYNTHESIS 6B (.1.2.3) AT5G36160 54 / 7e-08 Tyrosine transaminase family protein (.1) AT1G80360 48 / 1e-05 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 46 / 5e-05 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT5G53970 45 / 5e-05 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT1G01480 45 / 5e-05 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G124100 [exp] 53 / 2e-07 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.017G014200 [exp] 51 / 9e-07 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.012G083300 [exp] 48 / 8e-06 AT4G24670 489 / 1e-171 tryptophan aminotransferase related 2 (.1.2) Potri.007G088426 [exp] 47 / 1e-05 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.T125108 [exp] 47 / 1e-05 AT4G24670 487 / 7e-171 tryptophan aminotransferase related 2 (.1.2) Potri.001G177000 [exp] 46 / 4e-05 AT1G80360 573 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.010G044500 [exp] 45 / 7e-05 AT1G70560 504 / 4e-179 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.008G187800 [exp] 45 / 8e-05 AT1G70560 477 / 1e-168 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.017G014100 [exp] 44 / 0.0001 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013699 [exp] 624 / 0 AT1G71920 609 / 0.0 HISTIDINE BIOSYNTHESIS 6B (.1.2.3) Lus10005564 [exp] 600 / 0 AT1G71920 597 / 0.0 HISTIDINE BIOSYNTHESIS 6B (.1.2.3) Lus10018962 [exp] 56 / 3e-08 AT1G77670 289 / 2e-93 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10017934 [exp] 56 / 3e-08 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10013676 [exp] 52 / 6e-07 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10033661 [exp] 50 / 3e-06 AT5G36160 499 / 1e-176 Tyrosine transaminase family protein (.1) Lus10039861 [exp] 49 / 5e-06 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10018626 [exp] 49 / 6e-06 AT2G20610 517 / 0.0 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10023080 [exp] 47 / 2e-05 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10036396 [exp] 47 / 2e-05 AT3G61510 660 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.013G113900.1 pacid=42812400 polypeptide=Potri.013G113900.1.p locus=Potri.013G113900 ID=Potri.013G113900.1.v4.1 annot-version=v4.1 ATGGGTGTGATTGATATCTACAACACTGCCTCTTCTCTTTGCTTGATCAAGTCCAATAACAATTTTCACCAAGCTTTGGTGCCTCAAAGACCCACTTGCT CATTTCAAAGAAACGGCAATCCCAGAAGAGTTGTTGCCATGACTTCTACTGTGCCTGTAGAACATGTCAATGAGGGTCAACAGAATGTGACTGGTGACTC GTTTATTCGTTTCCATTTGAGGAAATTGTCCCCTTATCAATCCATTTTGCCTTTTGAGATTTTGTCAGCGCAACTAGGAAGGAAACCTGAGGATATTGTT AAATTAGATGCAAATGAAAATCCTTATGGTCCACCTCCAGAGGTACTTGAAGCTCTAGGAACTTTGAAATTCCCATATATATACCCTGATCCTGAAAGCC GTAGATTACGTGAGGCACTTGCTATAGATTCTGGCCTTGAATCTAATCACATTCTAGTGGGATGTGGTGCTGATGAGCTTATTGATCTAATTATGCGATG CACACTGGATCCTGGTGACAAGATTGTAGACTGTCCTCCAACATTTACAATGTATGAATTTGATGCTGCAGTTAATGGTGCACTTGTAACTAAGGTTTTG AGGAAACCAGACTTTAGCTTGAATGTAGATCTCATTGTTGGTGCTGTTAGAAAGGAGAAACCCAAATGCATATTCTTAACATCACCAAACAATCCAGATG GGAGCATAATAAATGATGAAGATCTTCTGAAAATCCTTGAGCTTCCGATTTTGGTGGTGCTGGATGAAGCATACATTGAATTTTCAGGACTGGAATCTAG GATGAAGTGGGTGAAGAAGCATGATAATTTAATTGTTCTGCGGACATTTAGCAAAAGAGCAGGCTTAGCAGGGCTCCGTGTTGGTTATGGAGCATTTCCC TTGAGCATCATTGAGTATCTTTGGAGAGCTAAGCAACCTTATAATGTTTCTGTTGCTGCTGAAGTTGCTGCATGTGCAGCATTGCAGAACCCTACATACC TTGAGGATGTCAAAAATGCTTTGGTAGAAGAGAGGGAAAGACTTTTTAAGTTTCTGCAGGAAGTGCCATTTCTCACACCATTTCCAAGTCATTCTAATTT CATTCTTTGTGAGGTGAAATCTGCAATGGATGCTAAGAAGCTCAAGGACGATCTTGCTAGTATGGGAGTGATGGTCCGTCACTACAATAAGAAAGAACTG AAGGGTTTCATTCGAGTATCTGTTGGGAAGCCTGAACAAACAGATATATTGATGCAGTGTCTTAAGCGCCTTTCTTGA
AA sequence Show only first row Show all	>Potri.013G113900.1 pacid=42812400 polypeptide=Potri.013G113900.1.p locus=Potri.013G113900 ID=Potri.013G113900.1.v4.1 annot-version=v4.1 MGVIDIYNTASSLCLIKSNNNFHQALVPQRPTCSFQRNGNPRRVVAMTSTVPVEHVNEGQQNVTGDSFIRFHLRKLSPYQSILPFEILSAQLGRKPEDIV KLDANENPYGPPPEVLEALGTLKFPYIYPDPESRRLREALAIDSGLESNHILVGCGADELIDLIMRCTLDPGDKIVDCPPTFTMYEFDAAVNGALVTKVL RKPDFSLNVDLIVGAVRKEKPKCIFLTSPNNPDGSIINDEDLLKILELPILVVLDEAYIEFSGLESRMKWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFP LSIIEYLWRAKQPYNVSVAAEVAACAALQNPTYLEDVKNALVEERERLFKFLQEVPFLTPFPSHSNFILCEVKSAMDAKKLKDDLASMGVMVRHYNKKEL KGFIRVSVGKPEQTDILMQCLKRLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10330		ATHPA1, HPA1, H...	HISTIDINE BIOSYNTHESIS 6A, EMB...		Potri.013G113900 [exp]	0	1
AT2G31955		CNX2	cofactor of nitrate reductase ...		Potri.009G024100 [exp]	20.12	0.8002	CNX2.1
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231850 [exp]	68.73	0.7756
AT5G59250			Major facilitator superfamily ...		Potri.001G244100 [exp]	68.93	0.7752
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.014G102000 [exp]	141.49	0.7432

Compare expression of checked genes

Potri.013G113900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.