Plant FIBer expression Database

Potri.013G114000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71910 48 / 7e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G084500
[exp]
265 / 3e-91 AT1G71910 / unknown protein
Potri.018G137700
[exp]
54 / 3e-09 ND /
Potri.T045901
[exp]
54 / 5e-09 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016934
[exp]
78 / 6e-18 AT1G71910 54 / 3e-09 unknown protein
Lus10014823
[exp]
76 / 9e-16 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
PFAM info
Representative CDS sequence
>Potri.013G114000.1 pacid=42811402 polypeptide=Potri.013G114000.1.p locus=Potri.013G114000 ID=Potri.013G114000.1.v4.1 annot-version=v4.1
ATGGCTACCACTGAGGACTTCACCTTCCCCATCTTCACAGACCCTTTCTCATGCAGCATCGATTCCCCACCTCTATGGTGCTTGTCTCCCGCAGCCTCTC
CTGATCATCCTTACCATGAAGAAACATCAAAAGAAAGCAGCACAGAGGGAGAGGAGAGTGATCAAGAAGAAGAATCCTATAAAGATTGTTTTCCTACTGA
ACCCATCAATCACTTAACTCCAAGGAAGAGCTTTTCAAGCGTAGAGGAGCTGGGCAAGCTGGTGAGAAGAAATGGTAATCGAAATGATAAGGAGGAGAAG
ATGGACATGTTATGGGAGGATTTCAATACTGAAGAGAGATTGCCTAGAAGTCACAGTAGTTCAAGATTGGATTCTGAAACGGTTAGCGTGGGCTGTGTTG
AAGCTTTAAGAATGTCCAAACCTAATAACGGCGCCACCGCCATCTTTTCTCCAAGGAAACCAGGCTTGGTGGTGGTCATGAAAGTGTTGAAGAGGTTTTT
CTTGCTTCACAATTCTCATAGGTCAGTTAATAAGCATCACAGCTCTTACAGGCAGTCAGTTAAGGGTCACGGATCACACAAGTCTGTAAAAACTGGTTCA
TGGTGA
AA sequence
>Potri.013G114000.1 pacid=42811402 polypeptide=Potri.013G114000.1.p locus=Potri.013G114000 ID=Potri.013G114000.1.v4.1 annot-version=v4.1
MATTEDFTFPIFTDPFSCSIDSPPLWCLSPAASPDHPYHEETSKESSTEGEESDQEEESYKDCFPTEPINHLTPRKSFSSVEELGKLVRRNGNRNDKEEK
MDMLWEDFNTEERLPRSHSSSRLDSETVSVGCVEALRMSKPNNGATAIFSPRKPGLVVVMKVLKRFFLLHNSHRSVNKHHSSYRQSVKGHGSHKSVKTGS
W

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G71910 unknown protein Potri.013G114000
[exp]
0 1
AT2G24060 Translation initiation factor ... Potri.006G182000
[exp]
3.00 0.8234
AT4G10150 RING/U-box superfamily protein... Potri.013G095100
[exp]
7.07 0.8082
AT3G63440 ATCKX6, CKX6, A... CYTOKININ OXIDASE 6, cytokinin... Potri.003G203600
[exp]
8.00 0.7634
AT5G25280 serine-rich protein-related (.... Potri.006G258600
[exp]
10.67 0.7621
AT2G41430 LSR1, CID1, ERD... CTC-Interacting Domain 1, dehy... Potri.003G202500
[exp]
10.81 0.7712
AT2G38080 ATLMCO4, IRX12,... LACCASE 4, IRREGULAR XYLEM 12,... Potri.016G112000
[exp]
12.64 0.7933
AT5G12870 MYB ATMYB46 myb domain protein 46 (.1) Potri.001G258700
[exp]
16.88 0.8064
AT2G24830 C3HZnF zinc finger (CCCH-type) family... Potri.018G016200
[exp]
17.60 0.7378
AT1G15100 RHA2A RING-H2 finger A2A (.1) Potri.005G081200
[exp]
20.49 0.7575
AT1G17840 AtABCG11, WBC11... DESPERADO, CUTICULAR DEFECT AN... Potri.017G051300
[exp]
21.02 0.7394

Potri.013G114000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.