Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34420 792 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G41820 371 / 6e-114 Leucine-rich repeat protein kinase family protein (.1) AT5G63930 337 / 9e-100 Leucine-rich repeat protein kinase family protein (.1) AT5G44700 336 / 1e-98 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G48940 332 / 2e-97 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G17230 327 / 4e-96 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 324 / 7e-95 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G28440 306 / 4e-89 HSL1 HAESA-like 1 (.1) AT4G20140 308 / 2e-88 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G34110 305 / 2e-88 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G084800 [exp] 1291 / 0 AT1G34420 753 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G084700 [exp] 501 / 8e-167 AT1G34420 432 / 2e-140 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.006G051700 [exp] 393 / 3e-122 AT2G41820 1343 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G055400 [exp] 390 / 3e-121 AT2G41820 1311 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G175700 [exp] 338 / 9e-100 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 334 / 3e-98 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G108200 [exp] 329 / 5e-98 AT4G08850 678 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.011G139700 [exp] 330 / 3e-97 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G198000 [exp] 327 / 2e-96 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009429 [exp] 862 / 0 AT1G34420 809 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10006067 [exp] 438 / 5e-144 AT1G34420 371 / 1e-118 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10007543 [exp] 345 / 2e-105 AT2G41820 1130 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011756 [exp] 334 / 3e-98 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10017782 [exp] 309 / 1e-89 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10031108 [exp] 306 / 4e-89 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2) Lus10031689 [exp] 306 / 4e-89 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10039641 [exp] 305 / 3e-88 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10038930 [exp] 302 / 2e-87 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10027221 [exp] 301 / 3e-87 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.013G114200.1 pacid=42812026 polypeptide=Potri.013G114200.1.p locus=Potri.013G114200 ID=Potri.013G114200.1.v4.1 annot-version=v4.1 ATGACAACAAGGTATGTGCAGCAAAGAACCTCTATTTTCTTGTCCTTTTTGTTCTTGTTATTTCCTGCGGTGCTCTCTGAACTATCCTCAAACCAAACCA GCATCATGGTCAATCTGTCTAAGTTCCTTAACTTTTCTAATTCTTCATGGGATGCTACTAGAGACCCATGTTCTTGGAAGGGAGTTACATGTAGCTCTGG TAACTCATCAGTAACTGGTCTTTTTCTATCTATGTTTGGTCTCTCCAACTCTAATTCCTTGGCTGATGTTTGCAAGATTGAAACTTTACGGTCCCTTGAT CTTTCTAAAAACCGTTTGAGCTTAATCCCAGATGATTTCGTCAATGATTGTGGAAGGATTGATGGCCTAAAGTTGTTGAATATTAGCCAAAATAAATTAG ATGGTCCTTTGCCAACTTTTAATGGTTTTGTTGGGTTAGAATTTTTGGACTTGTCTTTCAATTCTTTGTCTGGTAATGTTAGTCCACAGTTAGATGGATT GCTTGCACTCAAAAGCTTGAATCTTAGTTTCAATAAGTTCAGCGGTCCTCTTCCTGTAAACGTTGGAAAGTCCTTGCTGTTGGAGAGTCTACAGCTCTCT ATGAATCATTTCCAAGGTACTATCCCTCAAGATATCGCGAATTGTCAGAACTTGAGCGTGATTGATTTTAGTGGAAATGCTCTTGATGGGTCTATTCCTT CTAGGATTGGAAATCTCAAAAAGTTGAGGTTTTTGATTTTGTCTTCCAATAATTTGAGTGGAGATATTCCAGCAAACATTTCAAATATTCCAACCTTGTT TCGATTTGCAGCAAATCAAAACAAGTTTGATGGTAAAATTCCCAGTGGAATTACAAGATATCTTACTTTGTTCGATCTTAGTTTCAATAAGTTGAGAGGG CCTATTCCAGGAGACATTTTGTCACAGTCGAAATTGCAACTTGTGGATTTGTCTTACAATCAGTTAGATGGTTCAATACCTTCGAGTATATCTGCAAGCT TGCTTAGATTGAGATTGGGAGGAAACAATCTCAATGGCTCGATACCTTCTTCATTTGATTCACTTGAGAATTTGACTTACTTGGAGCTGGATAACAATAG GTTGACTGGTGTGATACCTCCTGAGTTGGGTTCTTGCCAAAGTTTGGCACTGTTGAATTTGGCACAGAATGACCTTGCAGGATCTGTACCTTCACTATTG GGAAATCTCAACGATCTTCAAGTTTTGAAGCTTCAGCATAACAACTTGGTTGGAGAAATCCCTTCAGAGATCACTCGATTACAGAAGTTATCAATCTTGA ACATCAGCTGGAATTCGCTTACTGGTTCAATACCTTCTTCAATTTCAAACTTGCAAAGCCTTGCTCACTTGAACCTGCAATGTAACAAGCTTCAGGGTCC AATACCTGCCACTGTCAACAGTATGAACTCTCTGTTAGAACTCCAACTTGGGCAAAATCAACTAAATGGAACGATTCCATTGATGCCAGTCAAATTGCAG ATTTCCTTGAATCTCAGCAGCAACCTCTTTCAAGGACCTATTCCAGGAACTCTTTCCCGACTGAAGGACTTGGAAGTTTTGGATCTCTCAAACAACAATT TCTCGGGTGAGATTCCCAGCTCTTTTACTGAAATGGAATCCCTAAATCAGTTGATACTCTCAAACAATCAGCTTTCTGGAGTCATCCCAGGGTTCAAACC ATATGTGTCTTTAAGTGCAAGAGGAAATGCAGGACTTATAAACAAGACAGCAACAATAACTCCCCAAGAATCCCCAAAGAAGGGGAAATCAGTTGCTGTA CCAGTTGTGCTTGCAGTTGTTGCTGCTGTTCTTGCTGTTGGAGCTGTCTCGATTATAGTTGTGTCATTATCCAGACGCTTTCTCAAGGTTAACAATCAGC AGTCACAATCAGGGGAAGAGCTTCCGCCTCCTCAAGTAATCGAAGGCATTCTGTTGACTACAAATGGAATTCACAGGTCTAACATCGACTTCACCAAAAC CATGGAAATAGCTGCTGATCCATTGAACATTGAGTTGAAGACTAGGTTTTCAACATACTATAAGGCCACCATGCCTTCTGGAGCACGCTACTTTGTCAAG AAGCTCAACTGGAGCGACAAGATATTCCAATTGGGTAGCCATCATAAATTCGGACAAGAGCTGGAAGATTTAGGTAAACTGAGCAATTCCAATGTCATGA CTCCTTTGGCCTATGTATTGAGCATGGACAGTGCTTATCTCTTCTATGAATACGCTGAAAAGGGTACCCTTTTTTATGTTCTTCATGGTAAACTGGGAGA TGCTTTGGACTGGGCAAGCCGTTACAGTATAGCAGTTGGAGTTGCTCAGGGCCTTACCTTTCTTCATGGATGCACCTCTGGTCCGATTCTCCTCCTCGAC CTTTCAAGCCAAAACATTTTCCTCAAGTCTCTGAAGGAGCCTCTCGTAGGAGACATTGAGCTCCACAAAGTGATTGATCCAACAAAGAGCACTGGCAGCC TTTCGACAGTTGCTGGCTCTGTCGGCTATATTCCACCAGAGTATGCATACACAATGAGGGTGACAATGGCTGGGAATGTATATAGCTTTGGGGTCGTTCT ACTGGAGTTGCTGACAGGAAAGCCAGCAGTAAGTGAGGGAACTGAACTAGCCAAGTGGGTCTTAAGTAAGTCGAAACAGCAAGACAAGTGGGATCACATC CTTGATTATAACATCAGCAGGACTTCACCTGCTGTCAGAGGCCAGATGCTTGCAGTCCTTAAGATTGCCCTTAGTTGCGTTAGTGTTTCCACAGAAGCAA GGCCAAAGATGAAGAGTGTTTTAAGGTTGATCGTCAATGCACGATGA
AA sequence Show only first row Show all	>Potri.013G114200.1 pacid=42812026 polypeptide=Potri.013G114200.1.p locus=Potri.013G114200 ID=Potri.013G114200.1.v4.1 annot-version=v4.1 MTTRYVQQRTSIFLSFLFLLFPAVLSELSSNQTSIMVNLSKFLNFSNSSWDATRDPCSWKGVTCSSGNSSVTGLFLSMFGLSNSNSLADVCKIETLRSLD LSKNRLSLIPDDFVNDCGRIDGLKLLNISQNKLDGPLPTFNGFVGLEFLDLSFNSLSGNVSPQLDGLLALKSLNLSFNKFSGPLPVNVGKSLLLESLQLS MNHFQGTIPQDIANCQNLSVIDFSGNALDGSIPSRIGNLKKLRFLILSSNNLSGDIPANISNIPTLFRFAANQNKFDGKIPSGITRYLTLFDLSFNKLRG PIPGDILSQSKLQLVDLSYNQLDGSIPSSISASLLRLRLGGNNLNGSIPSSFDSLENLTYLELDNNRLTGVIPPELGSCQSLALLNLAQNDLAGSVPSLL GNLNDLQVLKLQHNNLVGEIPSEITRLQKLSILNISWNSLTGSIPSSISNLQSLAHLNLQCNKLQGPIPATVNSMNSLLELQLGQNQLNGTIPLMPVKLQ ISLNLSSNLFQGPIPGTLSRLKDLEVLDLSNNNFSGEIPSSFTEMESLNQLILSNNQLSGVIPGFKPYVSLSARGNAGLINKTATITPQESPKKGKSVAV PVVLAVVAAVLAVGAVSIIVVSLSRRFLKVNNQQSQSGEELPPPQVIEGILLTTNGIHRSNIDFTKTMEIAADPLNIELKTRFSTYYKATMPSGARYFVK KLNWSDKIFQLGSHHKFGQELEDLGKLSNSNVMTPLAYVLSMDSAYLFYEYAEKGTLFYVLHGKLGDALDWASRYSIAVGVAQGLTFLHGCTSGPILLLD LSSQNIFLKSLKEPLVGDIELHKVIDPTKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVVLLELLTGKPAVSEGTELAKWVLSKSKQQDKWDHI LDYNISRTSPAVRGQMLAVLKIALSCVSVSTEARPKMKSVLRLIVNAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34420			leucine-rich repeat transmembr...		Potri.013G114200 [exp]	0	1
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.018G019800 [exp]	1.41	0.9206
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.009G109400 [exp]	2.44	0.9204
AT1G80300		ATNTT1	nucleotide transporter 1 (.1)		Potri.001G175200 [exp]	2.82	0.9168	AATP1.1,PtrAATP1
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009500 [exp]	3.16	0.9104
AT5G10380		ATRING1, RING1	RING/U-box superfamily protein...		Potri.007G097500 [exp]	4.00	0.9066
AT4G31800	WRKY	ATWRKY18, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G263600 [exp]	5.47	0.9094
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.005G200100 [exp]	6.48	0.9083
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G178050 [exp]	7.14	0.9173
AT1G68710			ATPase E1-E2 type family prote...		Potri.012G058000 [exp]	7.34	0.8831	Pt-ALA9.2
					Potri.017G111050 [exp]	8.77	0.8989

Compare expression of checked genes

Potri.013G114200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.