Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34430 549 / 0 EMB3003 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT3G25860 354 / 9e-118 PLE2, LTA2 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT1G54220 105 / 3e-24 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G13930 103 / 2e-23 Dihydrolipoamide acetyltransferase, long form protein (.1) AT3G52200 101 / 1e-22 LTA3 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT5G55070 87 / 5e-18 Dihydrolipoamide succinyltransferase (.1) AT4G26910 86 / 6e-18 Dihydrolipoamide succinyltransferase (.1.2.3) AT3G06850 84 / 3e-17 DIN3, LTA1, BCE2 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G084900 [exp] 592 / 0 AT1G34430 473 / 7e-165 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.010G126600 [exp] 361 / 1e-120 AT3G25860 470 / 2e-163 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.008G119500 [exp] 354 / 5e-118 AT3G25860 464 / 5e-161 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.001G198000 [exp] 108 / 4e-25 AT3G13930 724 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.003G043900 [exp] 107 / 1e-24 AT3G13930 771 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.008G027400 [exp] 103 / 2e-23 AT3G52200 754 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Potri.008G219700 [exp] 90 / 4e-19 AT3G06850 518 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.014G154700 [exp] 88 / 2e-18 AT4G26910 520 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Potri.011G089200 [exp] 88 / 2e-18 AT5G55070 562 / 0.0 Dihydrolipoamide succinyltransferase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006069 [exp] 376 / 2e-130 AT1G34430 377 / 3e-131 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10041467 [exp] 352 / 1e-117 AT3G25860 595 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10034304 [exp] 337 / 4e-111 AT3G25860 592 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10009432 [exp] 316 / 3e-107 AT1G34430 312 / 2e-106 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10009433 [exp] 143 / 2e-39 AT1G34430 251 / 2e-81 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10006877 [exp] 114 / 4e-27 AT1G54220 704 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037617 [exp] 111 / 7e-26 AT1G54220 716 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10008412 [exp] 104 / 2e-23 AT3G52200 725 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10001967 [exp] 103 / 4e-23 AT3G52200 717 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10032632 [exp] 88 / 2e-18 AT4G26910 560 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF00198 [poplar] [flax] 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CL0105 [poplar] [flax] Hybrid PF00364 [poplar] [flax] Biotin_lipoyl Biotin-requiring enzyme CL0105 [poplar] [flax] PF02817 [poplar] [flax] E3_binding e3 binding domain
Representative CDS sequence Show only first row Show all	>Potri.013G114300.1 pacid=42811746 polypeptide=Potri.013G114300.1.p locus=Potri.013G114300 ID=Potri.013G114300.1.v4.1 annot-version=v4.1 ATGGCTCTCTTCCTCCAAACCACATTTCTTACTTCCTCCTCTTCTCTTCGCCAAAAACCCTGTCTTTCTTCCTGGGCTTCCCACATTTCCTCTTCAAGAA CCCGCACCCGCACCCGCGTTCATGCCAAGATCCGCGAAATCTTCATGCCTGCTTTGAGTTCTACTATGACTGAAGGCAAGATTGTTTCTTGGGTCAAGTC CGAAGGTGATAAGCTTTCTAAAGGTGAAAGTGTTGTTGTTGTTGAATCCGACAAGGCTGACATGGACGTTGAGACTTTCTATGATGGTTACTTGGCTGCC ATCATGGTCGAGGAAGGTGGTGTTGCTGCCGTTGGATCGGCCATTGCTTTGTTAGCTGAATCCCCGGAGGAAATTGAAGAGGCTAAGTCTAAAGCTGCTT CTTCTTCTCCGGCTACATCTCCAGCCCCGGCGGTGGCGGCGGCTCCGGTTTCGGAATCCACCACTGGTTCTGGGGCTGTTGAGAAGGCAGTCGTGGTGAC GCCACCGTCTCCGTCGGTGGTGGCATCGGCGGTGCATCCGGCGTCGGAGGGAGGGAAAAGGGTGGTGGCGTCGCCGTATGCCAAGAAGCTCGCGAAGGAT TTGAAGGTGGATTTGGGGAGAGTGATAGGGAGTGGGCCTAATGGCAGAATTGTTGCCAAGGATGTTGAGGCTGCTGCTGCAGTGGCTGCTGAATTGGGTT CCCCAGCAGCGAAGGTTTCGGCGGCACCTGCTGTGCAGGCACCGCCCGGGATTGAGTTGGGATCGGTGGTGCCTTTTACGACGATGCAAGGGGCAGTATG TAGGAATATGGTGGAGAGTTTGTCAGTGCCTACATTTAGAGTTGGGTATACTATTACTACTGATGCACTTGATGCTCTTTACAAGAAGGTCAAGTCCAAG GGAGTGACAATGACAGCATTACTTGCAAAGGCAACTTCACTGGCATTGGTCAAGCATCCAGTAATAAACTCTAGTTGCCGAGATGGTAATAGCTTTACAT ATAATAGTAGCATCAACATTGCAGTTGCTGTGGCTATTGATGGTGGCTTGATTACACCTGTGCTTCAAGATGCTGATAAGGTTGACATTTACTCCCTGTC AAGAAAATGGAAGGAGTTAGTTGATAAGGCCCGAGCCAAGCAACTGCAACCTCAAGAATACAACACGGGCACTTTCACACTGTCAAACCTGGGAATGTTT GGTGTGGATCGATTTGATGCCATTCTGCCTCCTGGAACTGGAGCAATTATGGCCGTCGGAGCATCACAGCCAACTGTTGTAGGTACCAAAGATGGCCGGA TTGGTATGAAGAACCAGATGCAGGTAAATGTTACAGCTGATCATCGTGTAATCTATGGTGCTGATCTGGCTGCCTTCTTGCGAACACTGGCAAAGATTAT TGAGGACCCCAAAGACCTTACCTTCTAA
AA sequence Show only first row Show all	>Potri.013G114300.1 pacid=42811746 polypeptide=Potri.013G114300.1.p locus=Potri.013G114300 ID=Potri.013G114300.1.v4.1 annot-version=v4.1 MALFLQTTFLTSSSSLRQKPCLSSWASHISSSRTRTRTRVHAKIREIFMPALSSTMTEGKIVSWVKSEGDKLSKGESVVVVESDKADMDVETFYDGYLAA IMVEEGGVAAVGSAIALLAESPEEIEEAKSKAASSSPATSPAPAVAAAPVSESTTGSGAVEKAVVVTPPSPSVVASAVHPASEGGKRVVASPYAKKLAKD LKVDLGRVIGSGPNGRIVAKDVEAAAAVAAELGSPAAKVSAAPAVQAPPGIELGSVVPFTTMQGAVCRNMVESLSVPTFRVGYTITTDALDALYKKVKSK GVTMTALLAKATSLALVKHPVINSSCRDGNSFTYNSSINIAVAVAIDGGLITPVLQDADKVDIYSLSRKWKELVDKARAKQLQPQEYNTGTFTLSNLGMF GVDRFDAILPPGTGAIMAVGASQPTVVGTKDGRIGMKNQMQVNVTADHRVIYGADLAAFLRTLAKIIEDPKDLTF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Potri.013G114300 [exp]	0	1
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Potri.010G126600 [exp]	1.00	0.8725
AT2G02050			NADH-ubiquinone oxidoreductase...		Potri.010G099900 [exp]	7.14	0.8551
AT2G34590			Transketolase family protein (...		Potri.004G129800 [exp]	8.83	0.8575	Pt-PDH.2
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Potri.009G136900 [exp]	9.38	0.8322
AT5G10160			Thioesterase superfamily prote...		Potri.003G020300 [exp]	9.79	0.8298
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Potri.012G128200 [exp]	11.13	0.8048
AT5G01450			RING/U-box superfamily protein...		Potri.001G251900 [exp]	24.45	0.7944
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Potri.008G044700 [exp]	24.53	0.8249
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Potri.001G376500 [exp]	26.07	0.8540
AT5G19760			Mitochondrial substrate carrie...		Potri.001G004500 [exp]	26.11	0.8152

Compare expression of checked genes

Potri.013G114300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.