Plant FIBer expression Database

Potri.013G114400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G34380 424 / 1e-148 5'-3' exonuclease family protein (.1.2)
AT3G52050 82 / 7e-17 5'-3' exonuclease family protein (.1.2.3.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G125700
[exp]
73 / 7e-14 AT3G52050 510 / 1e-180 5'-3' exonuclease family protein (.1.2.3.4.5)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006622
[exp]
459 / 7e-162 AT1G34380 409 / 2e-142 5'-3' exonuclease family protein (.1.2)
Lus10039380
[exp]
455 / 4e-160 AT1G34380 402 / 1e-139 5'-3' exonuclease family protein (.1.2)
Lus10025723
[exp]
74 / 6e-15 AT3G52050 307 / 2e-104 5'-3' exonuclease family protein (.1.2.3.4.5)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0464 5_3_exonuc_C PF01367 5_3_exonuc 5'-3' exonuclease, C-terminal SAM fold
CL0280 PIN PF02739 5_3_exonuc_N 5'-3' exonuclease, N-terminal resolvase-like domain
Representative CDS sequence
>Potri.013G114400.7 pacid=42811386 polypeptide=Potri.013G114400.7.p locus=Potri.013G114400 ID=Potri.013G114400.7.v4.1 annot-version=v4.1
ATGATGAAGATGGTAGAGATCGCCATGCCCACCAATCTCCACATCAAACCCACTCTCACTTTTAACCCTTCTGCTTCCATCTCAACATGGAATCTAAGAA
AGAAACCAAGGGAAACAACAAAAAGGAAACTTGGTGCTGTTTTTGCTTCCATTTCTTCTTCTCATGACACCATTGGTGAGGAATTGTGGCCAAGGAGTGA
ACTTTGTGGGAGTAACAAGGAGAAGAGAGCAAGCAAGAAAAGGGTATTCTTTTTGGACGTGAACCCACTTTGTTATGCAGGAAGTACACCTAGCTTGCAT
TCTTTTGCTCACTGGATTTCTCTTTTCTTCTCTCAAGTTAGCCTCACTGACCCTGTTATTGCTGTTCTTGATGGAGATGGAGGAAGTGAGCATCGTAGAC
AGTTGTTACCTTCGTATAAAGCACACAGGAGGAAATTCTCAAGAAAATCATCAGCACCGCAAAAATATCCTGTTGAAAGGTCTCATGTTGTCATGGATGT
TCTTACAAAATGCAATGTTCCAGTTGTAAAAATTGAAGGTCATGAAGCAGATGATGTTGTTGCGACACTTGCAGGACAAGTTCTACAAAACAGACATAAA
GTGGTTATTGCCTCTCCTGATAAAGATTTCAAGCAGCTTATTTCTGAAGATGTACAGATTGTTTTGCCTATTGCAGAGTTAAATAGATGGTCCTTCTACA
CCCTAAAGCACTACATCTCTCAGTATAATTGTGATCCGTGCTCTGATCTGAGCTTTAGATGCATTATGGGTGATGAGGTTGATGGTGTACCTGGGATACA
AAATGTGGCTCCTGGATTTGGTCGAAAGACTGCTCTAAAGCTATTGAAAAAGCATGGTTCATTACAAAATTTACTAGATGCAGCAGCAGTACGAACTGTG
GGTAAAAAATACGCTCAAGATGCCTTAACAAAGCATTCTGATTACCTGCGAAGGAATTATGAAATTCTTGCACTGAGGAGTGACGTTGATGTTCAGCTAA
AAGAGGAATGGTTGGTTGAAAGAGACAGATGCAATGATTCAATTATTTTATCCAACTTCTTCAAGTTGTTGGAACAAAGCAAAAGACCTACCTACCAAAG
TGGTTCACATTCTAAAATTGATTAA
AA sequence
>Potri.013G114400.7 pacid=42811386 polypeptide=Potri.013G114400.7.p locus=Potri.013G114400 ID=Potri.013G114400.7.v4.1 annot-version=v4.1
MMKMVEIAMPTNLHIKPTLTFNPSASISTWNLRKKPRETTKRKLGAVFASISSSHDTIGEELWPRSELCGSNKEKRASKKRVFFLDVNPLCYAGSTPSLH
SFAHWISLFFSQVSLTDPVIAVLDGDGGSEHRRQLLPSYKAHRRKFSRKSSAPQKYPVERSHVVMDVLTKCNVPVVKIEGHEADDVVATLAGQVLQNRHK
VVIASPDKDFKQLISEDVQIVLPIAELNRWSFYTLKHYISQYNCDPCSDLSFRCIMGDEVDGVPGIQNVAPGFGRKTALKLLKKHGSLQNLLDAAAVRTV
GKKYAQDALTKHSDYLRRNYEILALRSDVDVQLKEEWLVERDRCNDSIILSNFFKLLEQSKRPTYQSGSHSKID

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G34380 5'-3' exonuclease family prote... Potri.013G114400
[exp]
0 1
AT2G47940 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP pr... Potri.002G207200
[exp]
3.60 0.8347
AT4G27220 NB-ARC domain-containing disea... Potri.001G426660
[exp]
4.89 0.8066
AT1G50180 NB-ARC domain-containing disea... Potri.005G009201
[exp]
5.65 0.7916
AT1G63770 Peptidase M1 family protein (.... Potri.003G129500
[exp]
8.00 0.7529
AT1G30520 AAE14 acyl-activating enzyme 14 (.1) Potri.011G164100
[exp]
10.09 0.7969
AT3G16230 Predicted eukaryotic LigT (.1.... Potri.001G186600
[exp]
14.49 0.7401
Potri.012G036400
[exp]
16.97 0.7433
AT4G38180 FAR1_related FRS5 FAR1-related sequence 5 (.1) Potri.017G091000
[exp]
17.49 0.7149
AT3G52080 CHX28 cation/hydrogen exchanger 28 (... Potri.009G059400
[exp]
17.77 0.6653
AT5G36930 Disease resistance protein (TI... Potri.011G012475
[exp]
18.43 0.7863

Potri.013G114400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.