Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22700 322 / 5e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G11540 58 / 5e-09 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G56290 43 / 0.0002 EMB2790, PEX5, ATPEX5 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) AT3G04240 42 / 0.0008 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G12400 41 / 0.0009 Hop3 Hop3, stress-inducible protein, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G085200 [exp] 509 / 0 AT1G22700 324 / 6e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.016G075700 [exp] 57 / 1e-08 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G208900 [exp] 56 / 2e-08 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G100700 [exp] 44 / 8e-05 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.006G178900 [exp] 44 / 8e-05 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.005G054800 [exp] 42 / 0.0003 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.011G170000 [exp] 42 / 0.0005 AT5G56290 1046 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.001G473100 [exp] 42 / 0.0008 AT5G56290 978 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021972 [exp] 346 / 1e-120 AT1G22700 312 / 5e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10041265 [exp] 346 / 2e-118 AT1G22700 303 / 5e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10021336 [exp] 56 / 2e-08 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 56 / 3e-08 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10035117 [exp] 46 / 2e-05 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 45 / 8e-05 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10003576 [exp] 45 / 9e-05 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.013G114500.1 pacid=42812237 polypeptide=Potri.013G114500.1.p locus=Potri.013G114500 ID=Potri.013G114500.1.v4.1 annot-version=v4.1 ATGCTTCTCCAAACCACCATCTCATCATCTCCACCTCTACAACACCTCCACCAGCATCCTCACTCTCTCCTACCATTTGGGTCTCTCAAGTTTAGGCCCC ACAAGCTCTCTCTTCAGGCCCTTTTTCAGCACTATAGTCCACCAGATTTGACAAATTTTAGGGCAGGCCATGGACTGAATGCCACTCAGTTTACTAATTT CCAGATACATGGAAAGGAGTCACTAATGGTATCCTCTAGCTCACCGAGTACTGAGAAACCCTCGAGGAATCCTCAGAACATTGAGGACAATGCTTGCATG AAAAGAGTGATAGTTTCTGTGTCTGCACTCTCATTTGGACAAATCTCATTGTTAACTTCTGTACAAGTGGCACATGCAGGAGAAAGTATCAAACCAGATG CACTTTATGAGGTTGGGGAGTTATTTGAATTGGGAATCCAGCTCTCTTATCTTCTTTTACTTTTAGCTTTGCTAGGGGTTGGAACTTTCTTTGTGATTCG TCAAGTTCTAATGCGTAGAGAGCTCGACCTTTCTGCTAAAGAATTGCAGGAGCAAGTAAGAAGCGGTGATGCCTCTGCAACTGGACTTTTTGAACTCGGT GCAGTAATGCTGAGGAGAAAATTTTACCCGGCTGCTACTAAATATTTACTTCAGGCAATTGAGAAGTGGGATGGTGAGGATCAAGATCTTGCCCAGGTTT ACAATGCGCTTGGTGTTAGCTATATTCTTGATGGGAAGCTTGACAAGGGAATCAAGCAATTTGAAGCTGCTGTGAAGCTTCAACCAGGGTATGTAACAGC CTGGAACAATCTTGGTGATGCCTATGAAAAGAAGAAAGACTTGAAGTCAGCTCTCAAGGCATTCGAAGAAGTGCTGCTCTTTGATCCTAACAATAAGGTG GCAAGGCCAAGAAGAGATGCTTTGAAGGATAAGGTACAAATGTACAAAGGAGTTCCAATCAAGTCTAAGGATAGATGA
AA sequence Show only first row Show all	>Potri.013G114500.1 pacid=42812237 polypeptide=Potri.013G114500.1.p locus=Potri.013G114500 ID=Potri.013G114500.1.v4.1 annot-version=v4.1 MLLQTTISSSPPLQHLHQHPHSLLPFGSLKFRPHKLSLQALFQHYSPPDLTNFRAGHGLNATQFTNFQIHGKESLMVSSSSPSTEKPSRNPQNIEDNACM KRVIVSVSALSFGQISLLTSVQVAHAGESIKPDALYEVGELFELGIQLSYLLLLLALLGVGTFFVIRQVLMRRELDLSAKELQEQVRSGDASATGLFELG AVMLRRKFYPAATKYLLQAIEKWDGEDQDLAQVYNALGVSYILDGKLDKGIKQFEAAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV ARPRRDALKDKVQMYKGVPIKSKDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22700			Tetratricopeptide repeat (TPR)...		Potri.013G114500 [exp]	0	1
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G040800 [exp]	3.60	0.9684
AT5G55220			trigger factor type chaperone ...		Potri.015G065900 [exp]	4.24	0.9659
AT4G28080			Tetratricopeptide repeat (TPR)...		Potri.006G180100 [exp]	5.91	0.9577
AT1G72640			NAD(P)-binding Rossmann-fold s...		Potri.003G063800 [exp]	6.70	0.9627
AT5G35170			adenylate kinase family protei...		Potri.018G113400 [exp]	6.92	0.9645
AT1G04420			NAD(P)-linked oxidoreductase s...		Potri.008G167400 [exp]	7.14	0.9653
AT1G02475			Polyketide cyclase/dehydrase a...		Potri.002G190300 [exp]	7.28	0.9382
AT4G28706			pfkB-like carbohydrate kinase ...		Potri.002G254500 [exp]	10.48	0.9497
AT1G52510			alpha/beta-Hydrolases superfam...		Potri.001G201500 [exp]	10.48	0.9557
AT4G12800		PSAL	photosystem I subunit l (.1)		Potri.002G239700 [exp]	10.67	0.9627	Pt-PSAL.3

Compare expression of checked genes

Potri.013G114500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.