Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34355 297 / 2e-83 FHA ATPS1 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) AT5G38840 72 / 2e-12 FHA SMAD/FHA domain-containing protein (.1) AT5G47790 56 / 6e-08 FHA SMAD/FHA domain-containing protein (.1) AT3G20550 43 / 0.0007 FHA DDL DAWDLE, SMAD/FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G111500 [exp] 67 / 6e-11 AT5G38840 342 / 1e-106 SMAD/FHA domain-containing protein (.1) Potri.006G003100 [exp] 57 / 7e-08 AT5G47790 412 / 9e-143 SMAD/FHA domain-containing protein (.1) Potri.016G003800 [exp] 53 / 7e-07 AT5G47790 430 / 5e-150 SMAD/FHA domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009434 [exp] 322 / 2e-91 AT1G34355 233 / 1e-61 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Lus10006070 [exp] 318 / 5e-90 AT1G34355 234 / 7e-62 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Lus10028665 [exp] 79 / 1e-14 AT1G34355 71 / 1e-12 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Lus10005098 [exp] 61 / 7e-09 AT5G38840 639 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10034354 [exp] 56 / 1e-07 AT5G38840 629 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10003911 [exp] 54 / 4e-07 AT5G47790 403 / 4e-139 SMAD/FHA domain-containing protein (.1) Lus10001916 [exp] 54 / 5e-07 AT5G47790 395 / 3e-136 SMAD/FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [poplar] [flax] PIN PF13638 [poplar] [flax] PIN_4 PIN domain
Representative CDS sequence Show only first row Show all	>Potri.013G114700.1 pacid=42811024 polypeptide=Potri.013G114700.1.p locus=Potri.013G114700 ID=Potri.013G114700.1.v4.1 annot-version=v4.1 ATGGCAAGCAACGAAGAGAAAAAACCTGAAGAAGAAGAAGAAGAAGAAGAGAGAAAGATCCCAGTTTTTACAGTACTAAGGAACGGTGCAATTCTCAAGA ACATTTTTGTAATCGACAAGTCACCATTACCTTCACCAACATCTTCAGAGCCGTCCATTGAAAATGAAGAGAACCCAGTTCAAGAAACTGAAGAAATCTT GAGTTTTGGTAGACACCCAGATTGCAGTATTGTTTTAAATCACCCTAGCATTAGCAGATTCCACCTTCAAATCAATTCAAGACCCTCTTCACAGAAGCTC TTTGTCACAGATTTATCTTCTGTCCATGGGACTTGGGTTTCAGGGAAGAAGATTGAGCCGGGGTTTCGTGTAGAGCTCAATGAAGGTGATACAATAAGGG TTGGTGGCTCAACTAGGTACTACAGGCTGCACTGGGTTCCTTTGAGCCGTGCATATGATATGGAAACCCCATTTATATCACCATTAGATATGGCAATGAT TGAAGAGAAGCGAGAGGAAAACCCAGTGCTTGAAGAAGAAAATGAGGCGAAAATGTCTCAGGATGAGAACTTAGTGGCAACTGAAAGAGAATCTGTTGAA GAGAAAGGCTCACTGGAAGTGGCAGGAAAAGATGATGAAAGATATCAGGCCATGGATTCTACATCAGTTGAAAATAGAGAAACAAAGTCTTTGGATTTAA TATTACAGGATGTAGGCTCCTTGTATTGTGAGGAGATTTGTGAGTCAATTGCAAAGAAAGAGATCTTGTCAGCTGCTTTAGTGCCTGATGAAAGCATGGA TTCTTTGTTTTATGATGCAAATGAAGATATAGAAATCTCATTCAGAAATGATCATAATGTGAAGGATATATTAAGCCCCACAACTGTCCAGGGAGTTATT TCGGAAACCAAGTGTCGGCAATATGATGGACATAACCAGAGCCCTGAATATTTTTCTGTTCGACAAGAACTGCCGGAGACAGAAACCAAAGGGAGTTCAA TGATCAGGGAATCCAATGCTGTGTTTTCTTCCTTGTCCACTGCAGAAGTGGAATCTCAGTCAGCCTCTGAGATGCTAGGAGCAACAGAAAATGGAAGCTT ATTGAGGAAAGGCCATGAACCAATTAATATCTTCTCTCATGGGATAGAAATGGTGAACTTGTCTTTGCCTGTAAAAGATCTTTCAGAGAATGACAGTAAA AAAGTCAGAAAAGAAAACCAGACTCTAGAGCATCTTGTTGCTTTAGAACCAACATATAAAGAAGGAAACCAAGGGAATTTCACAGCAAATCTGCTGGTGA ACCTGAACTCTGCATGTTCTGATGACCAAGCTGTTTCTTTAAAATCAACATATGAAGAAGGAAACCAGGAGAAATTCACTGCAAATCTGCTGGAGAACCT GAATTCTGCATGTTCTGGTGACCATGCTGTTGCTTTAGACCCAACATATGAAGAAGGAACCCGAGAGCATTTCACTGCAAATCTGCTGGAGAACCTGAAC ACTTCATCATGTTCTGATGACCATGCTGTTGCTTTAGATCCAACATATGAAGAAGGAACCCAAGAGAATTTCACTACAAATCTGCTGGAAAACCTGAACT CCTCATGTTCTGATGACCATGCTGCTGATGATATGCTTGAAGTGGAAAACCAGAATCTTTCAAGGGATGACCATGGGCAGAGTGTATACACCAGCATCTG CTCTGCGCTCCTTGCAGCGGAATCTGTGAGCTCATCTTTTCCAGTAGGACTCCTCTCTGAGATCATAGATAGCAAAAAATGCCAGACCCCAGAATCCGTA CTTGCTTCAATTGAAAACCAGGAGAACTTACAGAGCTCTCACGTCAGATCAGAGAAAAAACAGAGCTCTCGTAACATCTGGTCAAGAAGAGGGAAACCCA AAGCTGTTCTTCAGCTTCAAACAAGTAGGAGTAGAGAAAAGAATAGAGGAGATGATGTTGAATGGGAGAATCAGGAGAATATTGAGAATAGATCAATCTC AAAGACTATTTTCCCTGGTTCAGAAGCAGCAGAAGAAGTCCTTACCCCAGGCAAGGAGAATTACTCACCTAATACTCTTCTGCTGAAGTCCTTGAAAAAG AAGGGTAAACGAGAAGAAACGCAACTTTCCAACTCACGCAGATCAACCTCTTCAAAAATTGCTTTTAGTCCCTATAAGCAACCAGAAGAAGAGATGATCG CCTCTCCAGACAAAGAAAACCAGACACCAAAAGTTCTCCAACAAACAAAATTAGCTATACCAGCTTCAAGGAATCAAGTGAAATTCAAGCAAGAGATGGT ACTAGAGGAGTGTAAGGCAGAAAGAGTTCCACTACAATCTTTACTTGTGAATTTCTCAGGAAATAGCAATTCTGAAGCTTCAGTCCCTAATGATGCTACA AGAAGCAGTATTTCTGTTAATTGTTCTCAAATTATGCGGAAGAGTAACTTCACTGGAGATGGAAAGAGAAGATGGACTATGGTGGCAGATACAGCTTCTC TTGTGGACAAGGAGTCAAGGAAGTCATTACAGCTTTTACAAGGTCTCAAGGGGACTCATTTGGTCATTCCAAAAATGGTGATAAGGGAACTAGATTGTTT GAAGCGTCGTAGTAGCTTGTTTAGAAAGAAAACGGAGGCATCATTGGTGTTGGAATGGATAGAAGAGTGTATGGTGAGAACACCATGGTGGATTCATGTC CAGAGCTCAATGGAGGAGGGAAGGCACATAGCACCAACCCCACCTGCTTCTCCCCAGTCACGATTCAGTCAGGGAAGTGAAGGGTTTCCGTGTGGGACAG GAAGCTCAGTTCCGTTTCCAGCTCATGGAAGTTTTCTAGAAATTGTTTCACCAACAGCGGAAGACCATATCCTTGAATATGCTCTTTCCTATAGGAAAAT GAATAGAGATGGACAGCTCATCCTTCTAACTAATGACGTTACCCTGAAGATTAAAGCCATGTCAGAGGGGTTGATTTGTGAGACAGCCAAGGAATGTCGT GACAGTCTGGTGAACCCCTTCTCTGAGAGGTTCTTGTGGGCTGACAGCTCTCCTAGAGGACAGACTTGGTCTGTCTCGGACGATTTAGTTTTGAAGGAAA GGTATTACCAAAGCCCTTCAAAGAAATCATCTAAAGGAGAAGGTGCAAAGGGCTTGAAGCTCATTCTGCTTCATAATTCTCAGTATGGGCAGATCAGTCG GTCAGAACAATGTAGTTTGTTCAGAAACAGATACTTGTTTTAG
AA sequence Show only first row Show all	>Potri.013G114700.1 pacid=42811024 polypeptide=Potri.013G114700.1.p locus=Potri.013G114700 ID=Potri.013G114700.1.v4.1 annot-version=v4.1 MASNEEKKPEEEEEEEERKIPVFTVLRNGAILKNIFVIDKSPLPSPTSSEPSIENEENPVQETEEILSFGRHPDCSIVLNHPSISRFHLQINSRPSSQKL FVTDLSSVHGTWVSGKKIEPGFRVELNEGDTIRVGGSTRYYRLHWVPLSRAYDMETPFISPLDMAMIEEKREENPVLEEENEAKMSQDENLVATERESVE EKGSLEVAGKDDERYQAMDSTSVENRETKSLDLILQDVGSLYCEEICESIAKKEILSAALVPDESMDSLFYDANEDIEISFRNDHNVKDILSPTTVQGVI SETKCRQYDGHNQSPEYFSVRQELPETETKGSSMIRESNAVFSSLSTAEVESQSASEMLGATENGSLLRKGHEPINIFSHGIEMVNLSLPVKDLSENDSK KVRKENQTLEHLVALEPTYKEGNQGNFTANLLVNLNSACSDDQAVSLKSTYEEGNQEKFTANLLENLNSACSGDHAVALDPTYEEGTREHFTANLLENLN TSSCSDDHAVALDPTYEEGTQENFTTNLLENLNSSCSDDHAADDMLEVENQNLSRDDHGQSVYTSICSALLAAESVSSSFPVGLLSEIIDSKKCQTPESV LASIENQENLQSSHVRSEKKQSSRNIWSRRGKPKAVLQLQTSRSREKNRGDDVEWENQENIENRSISKTIFPGSEAAEEVLTPGKENYSPNTLLLKSLKK KGKREETQLSNSRRSTSSKIAFSPYKQPEEEMIASPDKENQTPKVLQQTKLAIPASRNQVKFKQEMVLEECKAERVPLQSLLVNFSGNSNSEASVPNDAT RSSISVNCSQIMRKSNFTGDGKRRWTMVADTASLVDKESRKSLQLLQGLKGTHLVIPKMVIRELDCLKRRSSLFRKKTEASLVLEWIEECMVRTPWWIHV QSSMEEGRHIAPTPPASPQSRFSQGSEGFPCGTGSSVPFPAHGSFLEIVSPTAEDHILEYALSYRKMNRDGQLILLTNDVTLKIKAMSEGLICETAKECR DSLVNPFSERFLWADSSPRGQTWSVSDDLVLKERYYQSPSKKSSKGEGAKGLKLILLHNSQYGQISRSEQCSLFRNRYLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Potri.013G114700 [exp]	0	1
AT5G15510			TPX2 (targeting protein for Xk...		Potri.017G092100 [exp]	11.66	0.9141
AT4G17000			unknown protein		Potri.009G081900 [exp]	16.37	0.9046
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.001G177100 [exp]	21.49	0.8987
AT3G44050			P-loop containing nucleoside t...		Potri.009G156000 [exp]	25.21	0.8935
AT2G16270			unknown protein		Potri.009G084400 [exp]	26.45	0.8960
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.002G010000 [exp]	28.89	0.8937
AT3G44050			P-loop containing nucleoside t...		Potri.004G193700 [exp]	31.30	0.8935
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.004G031600 [exp]	32.61	0.8930	Pt-ATK1.1
AT5G62550			unknown protein		Potri.015G063700 [exp]	34.20	0.8870
AT5G04320			Shugoshin C terminus (.1.2)		Potri.004G216000 [exp]	42.63	0.8922

Compare expression of checked genes

Potri.013G114700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.