Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34340 628 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G49950 542 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G50790 191 / 5e-55 esterase/lipase/thioesterase family protein (.1) AT2G03140 113 / 7e-26 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223100 [exp] 560 / 0 AT5G49950 648 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G146500 [exp] 189 / 2e-54 AT3G50790 512 / 0.0 esterase/lipase/thioesterase family protein (.1) Potri.006G136900 [exp] 107 / 4e-24 AT2G03140 1356 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035744 [exp] 567 / 0 AT5G49950 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037322 [exp] 554 / 0 AT5G49950 632 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037325 [exp] 553 / 0 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035739 [exp] 553 / 0 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036590 [exp] 526 / 0 AT5G49950 638 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035807 [exp] 226 / 2e-69 AT5G49950 283 / 6e-92 alpha/beta-Hydrolases superfamily protein (.1) Lus10001673 [exp] 187 / 9e-54 AT3G50790 536 / 0.0 esterase/lipase/thioesterase family protein (.1) Lus10017332 [exp] 153 / 4e-41 AT3G50790 431 / 9e-150 esterase/lipase/thioesterase family protein (.1) Lus10034894 [exp] 106 / 1e-23 AT2G03140 697 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033426 [exp] 101 / 4e-22 AT2G03140 1245 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.013G115000.1 pacid=42812397 polypeptide=Potri.013G115000.1.p locus=Potri.013G115000 ID=Potri.013G115000.1.v4.1 annot-version=v4.1 ATGGATTCTTCTTCTCTCAGCCCTTATATTCTCTTGTTCAATGCACTCTCGCAGATACCGACTTGTCACTATTTGGTAGCTTTCTTGATCATCTCCATTA CTTTTCTTTACAAGTTCTTGGAGGTCCATTTCTTTGAAGATGTTTTCTTTAAATCTCAAGGCACTCCTATCACTTACAACCCCTCTTCTCCGTTTTGTAA TGCCATTCTTTCCAGTTGTAAAATCCTCCACTCTAGGTTTGTAGCCACAACATGGATATCAAGTCCTCATTTTCAGACTGCCTTTTTGCAATTTTGTGGG AGGTCTCCGGTTTTTAGCTATAGAAGGCACTTGTTTCGTACTTCTGATGGTGGAACCATAGCTTTGGATTGGCTGATGAACGCTGATGTTTCTGGAGGTG CTTTTGGCATAAATGGTGCATCTCTTCCCATGAATAATGCTATTTCTCAAGATGAAACTACTCCGATTGTGGTTGTGGTTCCTGGCTTGGCAAGTTCCTC TACTTCTAATTATCTAAAGAATCTTGCCTTCAACCTGGCCAAACATGGATGGAATGTTGTTGTTAGCAACCACCGAGGACTTGGTGGTGTTTCAATTACT TCTGATTGCTTTTACAATGCTGGATGGACAGAAGATTTACGGGCAGTCGCTAATTATCTTCACGATAAGTACCCCAAGGCTCCGTTATTTGCAATTGGAA CTAGCATTGGAGCCAACATTTTGGTGAAATATCTTGGGGAGGATGGAGAGGGGACTCCTATTGCAGGGGCCGTGGCAGTTTGCAATCCTTGGGATCTTTT GATTGGAGACAGATTTATATGCCGCAGGCTGTTGCAGAGAATCTATGACAAAGCTCTTACAATTGGCCTCCAAGGTTATGCACAATTACATGAGCCTCTC TATACTCGGCTTGCTAATTGGGAAGGCATTAAAACGGCACGTTGTATCCGGGATTATGACCACTATGCAACCTGCCATGTTGGTAAATTTGAGACTGTGG ATACATACTATAGGCACTGTAGCAGTGCAGCTTATGTTGGGAATGTATCTGTGCCACTACTCTGCATTAGTGCTCTGGATGATCCAGTTTGCACTAGGGA AGCCATTCCTTGGGATGAATGCAGAGCAAACCCAAATATTGTGTTGGCTACACCACAGCATGGAGGACATCTAGCATTCTTTGAAGGATTAACTGCATCC AGCTCTTGGTGGATAAGGGCTGTTGATGAATTTCTTGGTGTTCTACGCTCTAGTCCATACATTCATGTACAGAAGAAGCAGACTTCTGGCCAGCATTCAG CGCTGGATTCTTCAATTGATCAGTATCCACACTTACATGTTGCTGAAGATGGAATAGTAACCGCAGCGAGCGGCGAGGAAAAAACAGATGGCATTGAAGA CATCAAAAATTTGCAGATGCTTAGCGAAGAAAAAACTACTGAAATGCTTTCAAATGCAGAACAAGAGAAGCACGTTACAGAAGCAAAGTCGGATTTCATG TCCGAGACTTGTCAAACCTCAGAAATAGCTAAAAACATCCAGGGTGTTGAATCTCCTGATATAACCTCTCCTCTTAGGAAGATTCCTAAATCAGATTTCG CAGCAGAATAG
AA sequence Show only first row Show all	>Potri.013G115000.1 pacid=42812397 polypeptide=Potri.013G115000.1.p locus=Potri.013G115000 ID=Potri.013G115000.1.v4.1 annot-version=v4.1 MDSSSLSPYILLFNALSQIPTCHYLVAFLIISITFLYKFLEVHFFEDVFFKSQGTPITYNPSSPFCNAILSSCKILHSRFVATTWISSPHFQTAFLQFCG RSPVFSYRRHLFRTSDGGTIALDWLMNADVSGGAFGINGASLPMNNAISQDETTPIVVVVPGLASSSTSNYLKNLAFNLAKHGWNVVVSNHRGLGGVSIT SDCFYNAGWTEDLRAVANYLHDKYPKAPLFAIGTSIGANILVKYLGEDGEGTPIAGAVAVCNPWDLLIGDRFICRRLLQRIYDKALTIGLQGYAQLHEPL YTRLANWEGIKTARCIRDYDHYATCHVGKFETVDTYYRHCSSAAYVGNVSVPLLCISALDDPVCTREAIPWDECRANPNIVLATPQHGGHLAFFEGLTAS SSWWIRAVDEFLGVLRSSPYIHVQKKQTSGQHSALDSSIDQYPHLHVAEDGIVTAASGEEKTDGIEDIKNLQMLSEEKTTEMLSNAEQEKHVTEAKSDFM SETCQTSEIAKNIQGVESPDITSPLRKIPKSDFAAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34340			alpha/beta-Hydrolases superfam...		Potri.013G115000 [exp]	0	1
AT5G18310			unknown protein		Potri.019G029600 [exp]	5.91	0.6503
AT2G19880			Nucleotide-diphospho-sugar tra...		Potri.018G087700 [exp]	44.72	0.6374
AT1G80510			Transmembrane amino acid trans...		Potri.003G011900 [exp]	49.47	0.5803
AT5G65000			Nucleotide-sugar transporter f...		Potri.005G075600 [exp]	76.01	0.6057
AT4G38240		GNTI, CGL1	N-ACETYLGLUCOSAMINYLTRANSFERAS...		Potri.009G168000 [exp]	122.31	0.5479	CGL1.3
AT2G45730			eukaryotic initiation factor 3...		Potri.005G238200 [exp]	125.27	0.5630
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.013G056000 [exp]	141.85	0.5775
AT2G38710			AMMECR1 family (.1.2)		Potri.010G240000 [exp]	144.67	0.5604
AT1G67400			ELMO/CED-12 family protein (.1...		Potri.008G175301 [exp]	175.13	0.5564
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.003G076100 [exp]	190.66	0.5381

Compare expression of checked genes

Potri.013G115000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.