Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SUT1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22710 645 / 0 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT1G71880 627 / 0 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT1G71890 620 / 0 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT1G66570 589 / 0 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT2G14670 584 / 0 ATSUC8 sucrose-proton symporter 8 (.1) AT5G43610 581 / 0 ATSUC6 sucrose-proton symporter 6 (.1) AT5G06170 575 / 0 ATSUC9 sucrose-proton symporter 9 (.1) AT1G09960 434 / 5e-148 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT2G02860 235 / 5e-70 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G085800 [exp] 837 / 0 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.002G106900 [exp] 461 / 2e-158 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.010G093600 [exp] 228 / 4e-67 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.008G148100 [exp] 224 / 6e-66 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029766 [exp] 650 / 0 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10017910 [exp] 649 / 0 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028614 [exp] 590 / 0 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028616 [exp] 587 / 0 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018915 [exp] 585 / 0 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018914 [exp] 582 / 0 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10007702 [exp] 543 / 0 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10014821 [exp] 478 / 2e-166 AT1G71890 532 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10032815 [exp] 449 / 8e-154 AT1G09960 694 / 0.0 sucrose transporter 4 (.1) Lus10009428 [exp] 418 / 2e-143 AT1G22710 471 / 1e-164 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF13347 [poplar] [flax] MFS_2 MFS/sugar transport protein
Representative CDS sequence Show only first row Show all	>Potri.013G115200.1 pacid=42811249 polypeptide=Potri.013G115200.1.p locus=Potri.013G115200 ID=Potri.013G115200.1.v4.1 annot-version=v4.1 ATGGAGAGTGGAGTTAGAAAAGAAAACAATCCCCCTTCCTCTTCTTTCAGTCTTCAAAAACAACCTCCTGCAACAAACCCTAGCCCACTGAGAAAGATCA TAATGGTTGCATCGATAGCTGCTGGTGTTCAATTTGGTTGGGCGCTACAGCTCTCTTTGTTAACCCCATATGTGCAACTCTTGGGCATTCCTCACACATG GGCTGCTTTCATCTGGCTTTGCGGCCCGATTTCTGGCATGTTAGTCCAGCCAACAGTGGGGTACTACAGTGACCGATGCACCTCCCGTTTTGGCCGTCGT AGCCCGTTTATTGCGGCGGGGGCTGGTTTTGTTGCCATTTCTGTGTTTCTCATTGGCTATGCCGCTGACATTGGCCATCTCTCTGGTGATTCCCTCACAA AAACAGCTAAGCCACGCGCAATTGCTGTGTTTGTGGTAGGGTTCTGGATTCTTGATGTTGCTAATAACATGCTTCAAGGTCCATGTAGGGCATTTCTTGC TGATCTTTCAGGGACGGATCACAAGAAGACTCGTACAGCCAATGCTTTCTACTCTTTCTTTATGGCTGTTGGCAATGTTCTTGGCTTTGCATCTGGGTCT TACACTCACTTGTACAGAATCTTTCCATTTTCAAGAACCAAGGCTTGTGATGTTTACTGTGCAAATCTCAAATCTTGTTTCTTCATCTCCATTGCCTTGC TTTTAACGTTGACAATTCTAGCTCTCTCTTACGTACGTGAAAAACCCTGGTCGCCGGAGGGAAGTTCCGGTGACGGAGGTAACGAGGAGGAGAAAGAGGT GGAGGGTGGAGAAGCTAAAGAGTCGACGCCAGCGCCTTTTTTTGGGGAAATAGTCGCTGCTCTTAAGAACTTGCAAAGACCTATGAGGATCCTCCTTTTG GTGACGTGTCTAAACTGGGTTGCGTGGTTTCCTTTCTTGTTGTTTGATACTGATTGGATGGGGAGAGAGGTGTACGGTGGTGATTCAAGTAGAAATGCTG ATCAACTGAAGATGTATGATCGTGGGGTCCGTGCAGGTGCATTGGGGTTACTGCTTAACTCGGTGGTTTTGGGATTCACTTCACTTGGTGTGGAGGTTTT GGCTCGTGGGGTTGGCGGGGTTAAAAGGCTGTGGGGGATTGTAAATTTTATCTTGGCTATTTGTTTGGCTATGACTATTTTGATCACCAAAGTGGCTCAA TCTAACAGAAGGTACACCACCGTGAATGGAGGAACCCACCTCTTGCCGCCGCCATCTGGTGTCAAGGCTGGTGCTCTAGCCCTTTTTGCTGTTATGGGCA TACCTCAAGCTATAACTTACAGCATCCCTTTTGCTTTGGCATCCATCTTTTCTAACACTTCGGGTGCTGGCCAAGGGCTTTCTCTTGGAGTTCTCAATCT TTCAATAGTTATACCACAGATGGTGGTTTCTGTAGCAGCTGGACCTTGGGATGCCCTTTTTGGAGGAGGAAATCTACCAGCTTTTGTTGTAGGAGCGGTT GCAGCTGCAGCCAGTGGAATATTGGCATTCACCATGCTTCCATCTCCGCCCCCTGACATCCCCTCAAACAAGAGGGCTGCCACCAGTAGTAGTGCTGCAT TCCATTGA
AA sequence Show only first row Show all	>Potri.013G115200.1 pacid=42811249 polypeptide=Potri.013G115200.1.p locus=Potri.013G115200 ID=Potri.013G115200.1.v4.1 annot-version=v4.1 MESGVRKENNPPSSSFSLQKQPPATNPSPLRKIIMVASIAAGVQFGWALQLSLLTPYVQLLGIPHTWAAFIWLCGPISGMLVQPTVGYYSDRCTSRFGRR SPFIAAGAGFVAISVFLIGYAADIGHLSGDSLTKTAKPRAIAVFVVGFWILDVANNMLQGPCRAFLADLSGTDHKKTRTANAFYSFFMAVGNVLGFASGS YTHLYRIFPFSRTKACDVYCANLKSCFFISIALLLTLTILALSYVREKPWSPEGSSGDGGNEEEKEVEGGEAKESTPAPFFGEIVAALKNLQRPMRILLL VTCLNWVAWFPFLLFDTDWMGREVYGGDSSRNADQLKMYDRGVRAGALGLLLNSVVLGFTSLGVEVLARGVGGVKRLWGIVNFILAICLAMTILITKVAQ SNRRYTTVNGGTHLLPPPSGVKAGALALFAVMGIPQAITYSIPFALASIFSNTSGAGQGLSLGVLNLSIVIPQMVVSVAAGPWDALFGGGNLPAFVVGAV AAAASGILAFTMLPSPPPDIPSNKRAATSSSAAFH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Potri.013G115200 [exp]	0	1	Pt-SUT1.2
AT3G62950			Thioredoxin superfamily protei...		Potri.014G134200 [exp]	2.23	0.9210
					Potri.013G013850 [exp]	10.00	0.9075
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G142100 [exp]	10.95	0.8968	Pt-ARF1.5
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Potri.019G076800 [exp]	12.24	0.8787	AGL12.1
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Potri.018G028100 [exp]	13.26	0.7864	RDR6.2,RDR905
AT1G69970		CLE26	CLAVATA3/ESR-RELATED 26 (.1.2)		Potri.008G191500 [exp]	16.37	0.8936
AT3G62950			Thioredoxin superfamily protei...		Potri.002G208500 [exp]	24.18	0.8899
AT3G03430			Calcium-binding EF-hand family...		Potri.014G030800 [exp]	24.49	0.8893
AT5G02140			Pathogenesis-related thaumatin...		Potri.006G088100 [exp]	34.98	0.8861
AT5G04080			unknown protein		Potri.006G043300 [exp]	35.94	0.8566

Compare expression of checked genes

Potri.013G115200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.