Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34320 888 / 0 Protein of unknown function (DUF668) (.1) AT5G08660 605 / 0 Protein of unknown function (DUF668) (.1) AT1G30755 457 / 8e-154 Protein of unknown function (DUF668) (.1) AT5G51670 79 / 2e-15 Protein of unknown function (DUF668) (.1) AT3G23160 75 / 6e-14 Protein of unknown function (DUF668) (.1) AT5G04550 70 / 2e-12 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G085900 [exp] 1135 / 0 AT1G34320 908 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G001500 [exp] 625 / 0 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1) Potri.001G305800 [exp] 583 / 0 AT1G34320 593 / 0.0 Protein of unknown function (DUF668) (.1) Potri.005G240300 [exp] 515 / 1e-176 AT1G30755 588 / 0.0 Protein of unknown function (DUF668) (.1) Potri.002G021400 [exp] 514 / 5e-176 AT1G30755 568 / 0.0 Protein of unknown function (DUF668) (.1) Potri.012G129900 [exp] 123 / 8e-30 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.008G026800 [exp] 80 / 2e-15 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.010G233700 [exp] 79 / 4e-15 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.006G117000 [exp] 78 / 9e-15 AT5G04550 356 / 8e-116 Protein of unknown function (DUF668) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006049 [exp] 889 / 0 AT1G34320 919 / 0.0 Protein of unknown function (DUF668) (.1) Lus10028708 [exp] 800 / 0 AT1G34320 827 / 0.0 Protein of unknown function (DUF668) (.1) Lus10018317 [exp] 530 / 0 AT1G34320 559 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017136 [exp] 525 / 3e-180 AT1G34320 570 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017260 [exp] 522 / 1e-178 AT1G30755 567 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017259 [exp] 441 / 6e-149 AT1G30755 484 / 3e-166 Protein of unknown function (DUF668) (.1) Lus10013554 [exp] 390 / 2e-129 AT1G30755 416 / 4e-140 Protein of unknown function (DUF668) (.1) Lus10013553 [exp] 77 / 2e-16 AT1G30755 79 / 1e-17 Protein of unknown function (DUF668) (.1) Lus10021210 [exp] 79 / 3e-15 AT3G23160 659 / 0.0 Protein of unknown function (DUF668) (.1) Lus10022201 [exp] 79 / 3e-15 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05003 [poplar] [flax] DUF668 Protein of unknown function (DUF668) PF11961 [poplar] [flax] DUF3475 Domain of unknown function (DUF3475)
Representative CDS sequence Show only first row Show all	>Potri.013G115300.5 pacid=42812412 polypeptide=Potri.013G115300.5.p locus=Potri.013G115300 ID=Potri.013G115300.5.v4.1 annot-version=v4.1 ATGGGGGGGCTTTGCTCGAGGAGCTCGACTGTAGATAATGCTCCCGGTGGAGGCTTTCCGCAGTTGAATGGTCATTTTAGTCATGGGCCTGGTTTGGTTT ATCAGACTCGTGAATTGAAAATAGATAACAATGCAAATCCATCTCCAATTGTGGAGAACGTGGATAATAAGCAGCTACGAGAACCGTTTTCGTTACCGGA AGTGACCGTGGTTCAATATGAGGTGAATCCGGATGACATTGATGATGGGATTCCTCGCTTGTCAAGGGCTCTATCCAATAAATCCGGATCAACCAAGTCC AAGCAGGCAGCTGTTGCAAAGGTCTCAGAAGTGAGTTCACTGTTAGGCAGAGCTGGTACTGCTGGGCTTGGAAAGGCATACGATGTATTGGACACACTTG GTAGTAGCATGACCAATTTAAATCCTAGCAGTGGTTTTACCTCAGGGCTGACGACAAAAGGGGATAAGATTTCAATTTTAGCTTTTGAAGTTGCAAACAC AATTGTTAAGGGTGCTAATCTAATGCAATCCCTTTCAGAAGAGAACATTAGACATTTAAAAGAAGTTGTGCTTCCCTCAGAGGGGGTGCAAAATCTAATA TCTAGAGATATGGATGAACTCTTGAGGCTAGCAGCAGCTGATAAGAGAGAAGAACTGAAAGTTTTTTCTGGAGAAGTGGTGCGTTTTGGAAACCGTTGCA AAGATCCTCAGTGGCACAACTTGGACCGTTATCTTGAAAAGTTGGGTTCAGAATTGACACCTGAAATGCAATTGAAGGATGAAGCAGAGACAGTTATGCA ACAATTGATGAATTTGGTTCAGTATACAGCAGAACTGTATCATGAAATGCATGCCTTGGACAGATTTGAACAAGATTACCGCCGTAAGCTTCAGGAAGAT GATAAAACAAATGCTGCTCAAAGAGGGGACAGTCTTGCTATTTTGAGGGCAGAGTTAAAGAGCCAAAGCAAGCATGTGAAAAGTTTGAAGAAGAAGTCGC TTTGGTCTAAGATTTTGGAAGAGGTGATGGAGAAGTTGGTAGATATTGTCCATTTCTTGCATTTGGAGATTCATGAAGCTTTTGGCAGTGCTGATGGCGA TAGACCAGTAAAAAGTTCTTCGAACCATAAAAAGTTGGGGCCTGCTGGTCTTGCATTGCATTATGCAAACATTGTCACTCAAATTGATACTCTTGTGTCC CGATCAAGTTCTGTGCCTCCAAATACAAGGGATGCTTTGTACCAGGGGCTGCCACCAAATATCAAATCTGCTTTGCGCTTTAAATTATTGTCATTTCAAG TTAACGAAGAGCTTACAGTCTCACAAATCAAAGCTGAAATGGAGAAAACTTTGCAGTGGCTTGTTCCTATTGCTACTAACACAACCAAAGCTCATCATGG ATTTGGTTGGGTTGGAGAATGGGCGAATACAGGGTCTGAGGTGAATCGTAAACCTGCTGGACAGACCGACTTGCTCAGGATAGAGACACTACACCATGCA GACAAGGAGAAGACTGAAACTTATATTCTTGAATTGGTGGTTTGGCTTCACCATCTTGTCAGCCAAGTAAGAGCTGGCAATGGTTCCAGATCTCCTGTTA AATCTCCGACTCGGTCCCCAAATGAGAAAACAATTCAGTTGTCTACACAAAAGCCAAGCTCCCCATCCCCCACATTGACAATTGAAGACCAAGAGATGCT TCGGGATGTGAGTAAGAGGAAAAAGACACCTGGGATAAGCAAGAGTCAGGAATTTGATACTGCAAAAACCAGGTTAAGCAAGCATCATCGGCTGAGTAAA AGTAGTAGCCACTCGCCAATGGGCGAAACTAGAAAAGATCCATTTCCCATTAGAAGGCCATCTTCTGTTCCTGTCATGAACTTTGATATAGACTGGATCA AGGCCTTGGATGTTATTGACCGAGTGGACACAATAAGAAGCTTCTAG
AA sequence Show only first row Show all	>Potri.013G115300.5 pacid=42812412 polypeptide=Potri.013G115300.5.p locus=Potri.013G115300 ID=Potri.013G115300.5.v4.1 annot-version=v4.1 MGGLCSRSSTVDNAPGGGFPQLNGHFSHGPGLVYQTRELKIDNNANPSPIVENVDNKQLREPFSLPEVTVVQYEVNPDDIDDGIPRLSRALSNKSGSTKS KQAAVAKVSEVSSLLGRAGTAGLGKAYDVLDTLGSSMTNLNPSSGFTSGLTTKGDKISILAFEVANTIVKGANLMQSLSEENIRHLKEVVLPSEGVQNLI SRDMDELLRLAAADKREELKVFSGEVVRFGNRCKDPQWHNLDRYLEKLGSELTPEMQLKDEAETVMQQLMNLVQYTAELYHEMHALDRFEQDYRRKLQED DKTNAAQRGDSLAILRAELKSQSKHVKSLKKKSLWSKILEEVMEKLVDIVHFLHLEIHEAFGSADGDRPVKSSSNHKKLGPAGLALHYANIVTQIDTLVS RSSSVPPNTRDALYQGLPPNIKSALRFKLLSFQVNEELTVSQIKAEMEKTLQWLVPIATNTTKAHHGFGWVGEWANTGSEVNRKPAGQTDLLRIETLHHA DKEKTETYILELVVWLHHLVSQVRAGNGSRSPVKSPTRSPNEKTIQLSTQKPSSPSPTLTIEDQEMLRDVSKRKKTPGISKSQEFDTAKTRLSKHHRLSK SSSHSPMGETRKDPFPIRRPSSVPVMNFDIDWIKALDVIDRVDTIRSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34320			Protein of unknown function (D...		Potri.013G115300 [exp]	0	1
AT5G65200		ATPUB38	ARABIDOPSIS THALIANA PLANT U-B...		Potri.012G076400 [exp]	4.79	0.8212
AT2G33490			hydroxyproline-rich glycoprote...		Potri.003G166300 [exp]	6.48	0.8031
AT1G78310			VQ motif-containing protein (....		Potri.002G099900 [exp]	9.48	0.7965
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.013G019200 [exp]	11.22	0.7465
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.013G130800 [exp]	12.64	0.7282
AT3G23160			Protein of unknown function (D...		Potri.008G164700 [exp]	23.04	0.7624
AT5G53110			RING/U-box superfamily protein...		Potri.001G091700 [exp]	23.62	0.7705
AT2G45910			U-box domain-containing protei...		Potri.001G239100 [exp]	25.37	0.7328
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Potri.004G047100 [exp]	26.98	0.7322
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Potri.017G101400 [exp]	27.83	0.7323

Compare expression of checked genes

Potri.013G115300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.