Plant FIBer expression Database

PTP1.1 (Potri.013G115400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol PTP1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71860 489 / 4e-175 ATPTP1, PTP1 protein tyrosine phosphatase 1 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G086001
[exp]
251 / 3e-84 AT1G71860 202 / 6e-66 protein tyrosine phosphatase 1 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028712
[exp]
493 / 2e-176 AT1G71860 431 / 2e-152 protein tyrosine phosphatase 1 (.1.2.3)
Lus10006053
[exp]
484 / 7e-173 AT1G71860 429 / 3e-151 protein tyrosine phosphatase 1 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0031 Phosphatase PF00102 Y_phosphatase Protein-tyrosine phosphatase
Representative CDS sequence
>Potri.013G115400.1 pacid=42811346 polypeptide=Potri.013G115400.1.p locus=Potri.013G115400 ID=Potri.013G115400.1.v4.1 annot-version=v4.1
ATGGCCTCCTCCTCCGCTGGCAACTCGCCACCGATCTCCACCATATCTTCCCTATCGAAACGTTTCGAATTCTCTCCCGATCCGCCGCCCAAAATCTCTC
TCTCGACCGACCAGTACCAGCATTGCTCCGAGGCTTTACACTTCTTTAAAGAGAAATTCAGGACCCCGAAGAGAATCGCACAAGAGTTCGCTCATTTACA
GGCTAGTAGGATAACACCGTCTCAGATGGCAAGAAGCTGCAAGGTGGCTCTTGACGGTGTGAATGTGAACAAAAACCGGTACCTGGATGTTGTACCATTT
GACCAAAATAGGGTTGTTCTTAATCCATGCAAGGATTATAGACCATCTGCAAGAGGATATATTAATGCGAGCCTCATCACGACTTCTTCATCAGATAACA
TTTCACAGTTCATAGCTACACAGGGCCCACTACCACATACATTCGAGGATTTCTGGGAGATGATAATACAGCACCATTGCCCTGTGATTGTGATGCTTAC
TCGATTAGTGGACAATTATAAGACAGTAAAATGTGGAGATTACTTTCAAGCAGAAGATGGTCCTAGAGATTTTGGAAATATTTCTATTGTGACGAAGTGG
ATCAAAACTACTGACACCTCATTACTGTTGCGCAACTTGAAGGTGGGCTATAAAGAGGCAGAGGAGCAACCCATGAATGTTTTGCATATTCAGTATCCTG
AATGGCCTGACCATGGAGTTCCAGAAGATACAATTGTTGTCCGTGAAATTTTTAAAAGAGTATATAATGTACCACCCAGTCTTGGCCCGATAGTGGTCCA
CTGCAGTGCAGGAATTGGTAGAACAGGAACATATTGCACAATTCACAACACAGTCCAGAGAATCCTTGTCGGTGACATGTCTGCTTTAGACATTGCTAAT
ACCGTTACCACATTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATGGAGCAATACTTTTTCTGCTATGAAGCAATCATTCATGAATTAGAAGATCTCA
TCTCGGAGATGAACAGTTAG
AA sequence
>Potri.013G115400.1 pacid=42811346 polypeptide=Potri.013G115400.1.p locus=Potri.013G115400 ID=Potri.013G115400.1.v4.1 annot-version=v4.1
MASSSAGNSPPISTISSLSKRFEFSPDPPPKISLSTDQYQHCSEALHFFKEKFRTPKRIAQEFAHLQASRITPSQMARSCKVALDGVNVNKNRYLDVVPF
DQNRVVLNPCKDYRPSARGYINASLITTSSSDNISQFIATQGPLPHTFEDFWEMIIQHHCPVIVMLTRLVDNYKTVKCGDYFQAEDGPRDFGNISIVTKW
IKTTDTSLLLRNLKVGYKEAEEQPMNVLHIQYPEWPDHGVPEDTIVVREIFKRVYNVPPSLGPIVVHCSAGIGRTGTYCTIHNTVQRILVGDMSALDIAN
TVTTFRSQRIGMVQTMEQYFFCYEAIIHELEDLISEMNS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G71860 ATPTP1, PTP1 protein tyrosine phosphatase 1... Potri.013G115400
[exp]
0 1 PTP1.1
AT1G55020 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, li... Potri.005G032800
[exp]
9.69 0.7198
AT5G15530 BCCP2, CAC1-B biotin carboxyl carrier protei... Potri.004G119000
[exp]
10.09 0.7054
AT3G07320 O-Glycosyl hydrolases family 1... Potri.002G247800
[exp]
20.19 0.7062 SGGN1.1
AT5G57590 BIO1 biotin auxotroph 1, adenosylme... Potri.006G170400
[exp]
30.49 0.6033
AT1G01730 unknown protein Potri.002G158500
[exp]
31.17 0.6075
AT1G24310 unknown protein Potri.010G059100
[exp]
32.31 0.5927
AT1G20080 SYT2, NTMCTYPE1... synaptotagmin 2, Calcium-depen... Potri.005G241700
[exp]
32.93 0.6755
AT2G38040 CAC3 acetyl Co-enzyme a carboxylase... Potri.016G110500
[exp]
38.49 0.6737 Pt-CAC3.2
AT5G16390 CAC1-A, BCCP-1,... BIOTIN CARBOXYL-CARRIER PROTEI... Potri.017G092500
[exp]
46.95 0.6551
AT4G16380 Heavy metal transport/detoxifi... Potri.006G019200
[exp]
49.83 0.6435

Potri.013G115400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.